Hello Rohini,
Ray Meta are actually changes made in the source code. The whole v2.0.0 series
is Ray Meta.
This is explained in the discussion (section "From Ray to Ray Meta").
See http://genomebiology.com/2012/13/12/R122#sec3
I encourage you to also try MEGAHIT (appeared in 2015).
http://bioinformatics.oxfordjournals.org/content/early/2015/01/19/bioinformatics.btv033.abstract
________________________________
From: Sinha, Rohini [rs3...@cumc.columbia.edu]
Sent: Thursday, May 21, 2015 11:55 AM
To: Boisvert, Sebastien
Subject: Ray Meta
Hi Sébastien,
I am a bioinformatician at Columbia University in NY. I haven been trying to
run Ray to assmble single end HiSeq whole genome shotgun data from gorillas. We
are looking to assemble the micro biome of the gut (bacteria, virus, fungi
etc). I was able to run Ray with this command -
mpiexec -n 30 Ray -k 31 -s chroloflexi_samples.fastq -o chroloflexi_ray
It ran okay but I was wondering if I ran Ray-meta correctly instead of Ray
vanilla. I couldn’t find an an option in the manual to run Ray meta. Could you
give me more information about this?
Thanks,
Rohini Sinha
Senior Programmer Analyst
Center for Infection and Immunity
Mailman School of Public Health
Columbia University
Phone: (212) 342-2295
Email: rs3...@cumc.columbia.edu
------------------------------------------------------------------------------
One dashboard for servers and applications across Physical-Virtual-Cloud
Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
Deep dive visibility with transaction tracing using APM Insight.
http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
_______________________________________________
Denovoassembler-users mailing list
Denovoassembler-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
