Hello, With #!/sw/bin/perl5.8.8 -w, I obtained this error message : "Can't locate Bio/SearchIO.pm in @INC (@INC contains: /sw/lib/perl5/5.8.8/darwin-thread-multi-2level /sw/lib/perl5/5.8.8 /sw/lib/perl5/darwin-thread-multi-2level /sw/lib/perl5/5.8.8/darwin-thread-multi-2level /sw/lib/perl5 /sw/lib/perl5/darwin /sw/lib/perl5-core/5.8.8/darwin-thread-multi-2level /sw/lib/perl5-core/5.8.8 /sw/lib/perl5/site_perl/5.8.8/darwin-thread-multi-2level /sw/lib/perl5/site_perl/5.8.8 /sw/lib/perl5/site_perl/5.8.8/darwin-thread-multi-2level /sw/lib/perl5/site_perl .) at ./blast_parser_02.pl line 5." Does Bio/SearchIO belong to the BioPerl package from fink?
Thanks, Benoît Guyonnet wrote: > > Hello, > > I have installed bioperl-pm588. As expected my script did not work because > I did not have perl 5.8.8 installed on my Mac. So I have installed Perl588 > from fink. > In my script I have replace #!/usr/bin/perl -w by #!/usr/bin/perl5.8.8 -w > > But when I run my script I obtain this message: > > -bash: ./blast_parser_02.pl: /usr/bin/perl5.8.8: bad interpreter: No such > file or directory > > Could you help me? > > Thanks, > > > Alexander Hansen-2 wrote: >> >> -----BEGIN PGP SIGNED MESSAGE----- >> Hash: SHA1 >> >> On 4/25/10 5:37 PM, Benoît Guyonnet wrote: >>> >>> hello, >>> >>> I would like to know if you have fixed your problem with BioPerl. I am >>> working on a Mac OS X version 10.6.3. I have Perl 5.10.0 installed on >>> it. I >>> would like to install also BioPerl. >>> Could you help me? >>> >>> Thanks, >>> >> >>> eric_donaldson wrote: >>>> >>>> Hello everyone, >>>> >>>> I am trying to install bioperl on my new macbook pro that is running >>>> Mac >>>> OSX 10.6. I downloaded fink and was able to install the bioperl-pm588 >>>> packages (there were no package for 5100), but I keep getting an error >>>> when trying to run a bioperl script. I think the problem is that I >>>> installed bioperl to work with perl 5.8.8 and my default perl is >>>> 5.10.0; >>>> but I do not know how to solve this problem. >>>> >>>> Does anyone know how to install bioperl on mac os 10.6? >>>> >>>> Thanks for your help, >>>> >>>> Eric >>>> >>>> >>> >> >> "fink install bioperl-pm588" You're totally free to install bioperl: >> >> http://pdb.finkproject.org/pdb/package.php/bioperl-pm588 >> >> and it will install a Fink perl package and use that. This won't affect >> your system's 5.10.0 at all. >> >> What the original poster's issue was is that it won't use perl 5.10.0 as >> of yet, but as long as any scripts you run don't try to use >> /usr/bin/perl as the interpreter, bioperl ought to work. >> >> - -- >> Alexander Hansen >> Fink User Liaison >> -----BEGIN PGP SIGNATURE----- >> Version: GnuPG v1.4.10 (Darwin) >> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ >> >> iEYEARECAAYFAkvUvCkACgkQB8UpO3rKjQ+77wCfTBahFUxeJbx/UG9KPDSWIKe1 >> TG0AnRtq6O6tDVr+QAG68XF0Vn0r1m9I >> =KBTK >> -----END PGP SIGNATURE----- >> >> ------------------------------------------------------------------------------ >> _______________________________________________ >> Fink-beginners mailing list >> [email protected] >> http://news.gmane.org/gmane.os.apple.fink.beginners >> > > -- View this message in context: http://old.nabble.com/bioperl-install-tp26783437p28359679.html Sent from the fink-beginners mailing list archive at Nabble.com. ------------------------------------------------------------------------------ _______________________________________________ Fink-beginners mailing list [email protected] http://news.gmane.org/gmane.os.apple.fink.beginners
