Hi Martin,

Thanks for your answer. However, it seems to me that cortical thickness follow 
a particular process with the recon-all -long process, isn’t it ? Is there any 
resample onto average time subject then other operation following ?

Best regards,
Matthieu

> Le 18 sept. 2016 à 16:26, Martin Reuter <mreu...@nmr.mgh.harvard.edu> a écrit 
> :
> 
> Hi Matthieu,
> 
> I never used PET data, but once you manage to resample you pet data onto the 
> surface, you will have a file similar to the thickness file for each 
> subjects. Instead of thickness it holds you PET information. From that point 
> on everything should be identical to the thickness analysis.
> 
> So this is really more a question how to get your PET data sampled onto the 
> surface. If no one else replies, write that into the subject line and repost. 
> 
> Best, Martin
> 
> 
>> On Sep 17, 2016, at 7:37 AM, Matthieu Vanhoutte 
>> <matthieuvanhou...@gmail.com> wrote:
>> 
>> Dear Freesurfer’s experts,
>> 
>> I would like to use the longitudinal mixed-effects model for surface PET 
>> analysis. Although I could find all the process to follow the longitudinal 
>> analysis of cortical thickness, I couldn’t resolve the steps/commands to 
>> apply successively to coregistered PET data on T1 MRI.
>> 
>> Could you precise me the process and commands to use for PET longitudinal 
>> analysis ?
>> 
>> Many thanks in advance !
>> 
>> Best regards,
>> Matthieu
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