Hi Bruce, Just wanted to check in and see if you had examined the files I uploaded yet? Kind regards, Bronwyn Overs Research Assistant
Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 neura.edu.au <http://neura.edu.au/> <https://twitter.com/neuraustralia> <https://www.facebook.com/NeuroscienceResearchAustralia> <http://www.neura.edu.au/help-research/subscribe> > On 16 May 2017, at 10:27 am, Bronwyn Overs <b.ov...@neura.edu.au> wrote: > > Hi Bruce, > > Thank you for offering to take a look at this medial surface problem. > > I have uploaded all of the relevant files to through the Martinos Centre > FileDrop v2.0 to your email address (fis...@nmr.mgh.harvard.edu > <mailto:fis...@nmr.mgh.harvard.edu>). Please let me know if you require any > additional information. > Kind regards, > Bronwyn Overs > Research Assistant > > Neuroscience Research Australia > Margarete Ainsworth Building > Barker Street Randwick Sydney NSW 2031 Australia > M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 > > neura.edu.au <http://neura.edu.au/> > <https://twitter.com/neuraustralia> > <https://www.facebook.com/NeuroscienceResearchAustralia> > <http://www.neura.edu.au/help-research/subscribe> >> On 5 May 2017, at 8:25 am, Bruce Fischl <fis...@nmr.mgh.harvard.edu >> <mailto:fis...@nmr.mgh.harvard.edu>> wrote: >> >> if someone can upload a dataset as well as the exact coordinates of the >> problem I'll take a look >> >> cheers >> Bruce >> >> On Fri, 5 May 2017, Yann Quidé wrote: >> >>> Hi all, >>> We also have the same issue, any idea/suggestion? >>> Thanks. >>> Yann >>> >>> On 27 Apr 2017, at 9:43 am, Bronwyn Overs <b.ov...@neura.edu.au >>> <mailto:b.ov...@neura.edu.au>> >>> wrote: >>> Hi Mailing List, >>> Still trying to solve the below medial surface problem. Does anyone >>> have any ideas? >>> Kind regards, >>> Bronwyn Overs >>> Research Assistant >>> Neuroscience Research Australia >>> Neuroscience Research Australia >>> Margarete Ainsworth Building >>> Barker Street Randwick Sydney NSW 2031 Australia >>> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >>> neura.edu.au <http://neura.edu.au/> >>> Follow @neuraustralia on twitter Follow NeuRA on facebook Subscribe to >>> the NeuRA Magazine >>> >>> On 28 Mar 2017, at 10:51 pm, Yann Quidé >>> <yannqu...@gmail.com <mailto:yannqu...@gmail.com>> wrote: >>> Dear all, >>> I have an equivalent issue with my data. Any idea on how to fix >>> this? >>> Thanks. >>> Yann >>> >>> Begin forwarded message: >>> From: Bronwyn Overs <b.ov...@neura.edu.au <mailto:b.ov...@neura.edu.au>> >>> Subject: Re: [Freesurfer] Medial Surface Problem >>> Date: 20 March 2017 10:28:37 am AEDT >>> To: Freesurfer support list >>> <freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu>> >>> Reply-To: Freesurfer support list >>> <freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu>> >>> Hello again mailing list, >>> Can anyone address the possible cause of the medial >>> surface problem shown below (overestimating of rh medial >>> surface, shows up in the long image and not the tp or base >>> images). Forgot to mention that I am using freesurfer v5.3 >>> with an updated mris_make_surfaces binary (sourced from >>> the development versionat >>> ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/dev_binaries/cento >>> <ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/dev_binaries/cento> >>> s6_x86_64/ ). >>> Here is the image again: >>> <unknown.png> >>> Kind regards, >>> Bronwyn Overs >>> Research Assistant >>> Neuroscience Research Australia >>> Neuroscience Research Australia >>> Margarete Ainsworth Building >>> Barker Street Randwick Sydney NSW 2031 Australia >>> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >>> neura.edu.au <http://neura.edu.au/> >>> Follow @neuraustralia on twitter Follow NeuRA on facebook >>> Subscribe to the NeuRA Magazine >>> >>> On 6 Mar 2017, at 1:17 pm, Bronwyn Overs >>> <b.ov...@neura.edu.au <mailto:b.ov...@neura.edu.au>> wrote: >>> Hi mailing list, >>> I am currently processing a longitudinal image and >>> have come across a problem at the medial surface in >>> the long image (step 3). As you can see in the >>> attached image, the rh medial surface has been >>> significantly overestimated and extends into the lh >>> surface. This error showed up only in only 1 of the >>> 2 long images for this subject, and both the >>> time-point images and the base are perfectly fine. >>> Do you know why this is happening? >>> <Screen Shot 2017-03-06 at 1.09.53 pm.png> >>> Kind regards, >>> Bronwyn Overs >>> Research Assistant >>> Neuroscience Research Australia >>> Neuroscience Research Australia >>> Margarete Ainsworth Building >>> Barker Street Randwick Sydney NSW 2031 Australia >>> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >>> neura.edu.au <http://neura.edu.au/> >>> Follow @neuraustralia on twitter Follow NeuRA on >>> facebook Subscribe to the NeuRA Magazine >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> The information in this e-mail is intended only for >>> the person to whom it is >>> addressed. If you believe this e-mail was sent to >>> you in error and the e-mail >>> contains patient information, please contact the >>> Partners Compliance HelpLine at >>> http://www.partners.org/complianceline . If the >>> e-mail was sent to you in error >>> but does not contain patient information, please >>> contact the sender and properly >>> dispose of the e-mail. >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> The information in this e-mail is intended only for the >>> person to whom it is >>> addressed. If you believe this e-mail was sent to you in >>> error and the e-mail >>> contains patient information, please contact the Partners >>> Compliance HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was >>> sent to you in error >>> but does not contain patient information, please contact >>> the sender and properly >>> dispose of the e-mail. >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> The information in this e-mail is intended only for the person >>> to whom it is >>> addressed. If you believe this e-mail was sent to you in error >>> and the e-mail >>> contains patient information, please contact the Partners >>> Compliance HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent >>> to you in error >>> but does not contain patient information, please contact the >>> sender and properly >>> dispose of the e-mail. >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> The information in this e-mail is intended only for the person to whom >>> it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you >>> in error >>> but does not contain patient information, please contact the sender >>> and properly >>> dispose of the e-mail. >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline >> <http://www.partners.org/complianceline> . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
