Hi Bruce, That's fine, thanks very much.
Bronwyn Overs Research Assistant Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 [ http://neura.edu.au/ | neura.edu.au ] [ https://twitter.com/neuraustralia | Twitter ] | [ https://www.facebook.com/NeuroscienceResearchAustralia | Facebook ] | [ http://www.neura.edu.au/help-research/subscribe | Subscribe ] From: "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> Sent: Wednesday, 14 June, 2017 00:02:04 Subject: Re: [Freesurfer] Medial Surface Problem thanks Bronwyn I got them. It will take a bit for us to get to as this is in the long stream and we have a new postdoc who will be taking it over. cheers Bruce On Tue, 13 Jun 2017, Bronwyn Overs wrote: > Hi Bruce, > Sure, files have been dropped again. > > Kind regards, > > Bronwyn Overs > Research Assistant > > Neuroscience Research Australia > > Neuroscience Research Australia > Margarete Ainsworth Building > Barker Street Randwick Sydney NSW 2031 Australia > M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 > > neura.edu.au > > Follow @neuraustralia on twitter Follow NeuRA on facebook Subscribe to the > NeuRA Magazine > > > On 13 Jun 2017, at 11:44 am, Bruce Fischl > <fis...@nmr.mgh.harvard.edu> wrote: > > Hi Bronwyn > Can you filedrop it again? I don't think I have it > Thanks > Bruce > > On May 15, 2017, at 8:27 PM, Bronwyn Overs <b.ov...@neura.edu.au> > wrote: > > Hi Bruce, > Thank you for offering to take a look at this medial surface > problem. > > I have uploaded all of the relevant files to through the > Martinos Centre FileDrop v2.0 to your email address > (fis...@nmr.mgh.harvard.edu). Please let me know if you require > any additional information. > > Kind regards, > > Bronwyn Overs > Research Assistant > > Neuroscience Research Australia > > Neuroscience Research Australia > Margarete Ainsworth Building > Barker Street Randwick Sydney NSW 2031 Australia > M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 > > neura.edu.au > > Follow @neuraustralia on twitter Follow NeuRA on facebook > Subscribe to the NeuRA Magazine > > > On 5 May 2017, at 8:25 am, Bruce Fischl > <fis...@nmr.mgh.harvard.edu> wrote: > > if someone can upload a dataset as well as the exact > coordinates of the problem I'll take a look > > cheers > Bruce > > On Fri, 5 May 2017, Yann Quidé wrote: > > Hi all, > We also have the same issue, any > idea/suggestion? > Thanks. > Yann > > On 27 Apr 2017, at 9:43 am, Bronwyn Overs > <b.ov...@neura.edu.au> > wrote: > Hi Mailing List, > Still trying to solve the below medial surface > problem. Does anyone > have any ideas? > Kind regards, > Bronwyn Overs > Research Assistant > Neuroscience Research Australia > Neuroscience Research Australia > Margarete Ainsworth Building > Barker Street Randwick Sydney NSW 2031 > Australia > M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 > 1265 > neura.edu.au > Follow @neuraustralia on twitter Follow NeuRA > on facebook Subscribe to > the NeuRA Magazine > > On 28 Mar 2017, at 10:51 pm, Yann Quidé > <yannqu...@gmail.com> wrote: > Dear all, > I have an equivalent issue with my data. Any > idea on how to fix > this? > Thanks. > Yann > > Begin forwarded message: > From: Bronwyn Overs <b.ov...@neura.edu.au> > Subject: Re: [Freesurfer] Medial Surface > Problem > Date: 20 March 2017 10:28:37 am AEDT > To: Freesurfer support list > <freesurfer@nmr.mgh.harvard.edu> > Reply-To: Freesurfer support list > <freesurfer@nmr.mgh.harvard.edu> > Hello again mailing list, > Can anyone address the possible cause of the > medial > surface problem shown below (overestimating of > rh medial > surface, shows up in the long image and not > the tp or base > images). Forgot to mention that I am using > freesurfer v5.3 > with an updated mris_make_surfaces binary > (sourced from > the developmentversionat > ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/dev_binarie > s/cento > s6_x86_64/ ). > Here is the image again: > <unknown.png> > Kind regards, > Bronwyn Overs > Research Assistant > Neuroscience Research Australia > Neuroscience Research Australia > Margarete Ainsworth Building > Barker Street Randwick Sydney NSW 2031 > Australia > M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 > 1265 > neura.edu.au > Follow @neuraustralia on twitter Follow NeuRA > on facebook > Subscribe to the NeuRA Magazine > > On 6 Mar 2017, at 1:17 pm, Bronwyn Overs > <b.ov...@neura.edu.au> wrote: > Hi mailing list, > I am currently processing a longitudinal image > and > have come across a problem at the medial > surface in > the long image (step 3). As you can see in the > attached image, the rh medial surface has been > significantly overestimated and extends into > the lh > surface. This error showed up only in only 1 > of the > 2 long images for this subject, and both the > time-point images and the base are perfectly > fine. > Do you know why this is happening? > <Screen Shot 2017-03-06 at 1.09.53 pm.png> > Kind regards, > Bronwyn Overs > Research Assistant > Neuroscience Research Australia > Neuroscience Research Australia > Margarete Ainsworth Building > Barker Street Randwick Sydney NSW 2031 > Australia > M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 > 1265 > neura.edu.au > Follow @neuraustralia on twitter Follow NeuRA > on > facebook Subscribe to the NeuRA Magazine > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > The information in this e-mail is intended > only for > the person to whom it is > addressed. If you believe this e-mail was sent > to > you in error and the e-mail > contains patient information, please contact > the > Partners Compliance HelpLine at > http://www.partners.org/complianceline . If > the > e-mail was sent to you in error > but does not contain patient information, > please > contact the sender and properly > dispose of the e-mail. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > The information in this e-mail is intended > only for the > person to whom it is > addressed. If you believe this e-mail was sent > to you in > error and the e-mail > contains patient information, please contact > the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If > the e-mail was > sent to you in error > but does not contain patient information, > please contact > the sender and properly > dispose of the e-mail. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > The information in this e-mail is intended > only for the person > to whom it is > addressed. If you believe this e-mail was sent > to you in error > and the e-mail > contains patient information, please contact > the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If > the e-mail was sent > to you in error > but does not contain patient information, > please contact the > sender and properly > dispose of the e-mail. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > The information in this e-mail is intended > only for the person to whom > it is > addressed. If you believe this e-mail was sent > to you in error and the > e-mail > contains patient information, please contact > the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If > the e-mail was sent to you > in error > but does not contain patient information, > please contact the sender > and properly > dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the > person to whom it is > addressed. If you believe this e-mail was sent to you in > error and the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was > sent to you in error > but does not contain patient information, please contact > the sender and properly > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
