Hi Hweeling what is FREESURFER_HOME set to in the environment? Does that file exist? It is a standard part of our distribution
cheers Bruce On Tue, 21 Nov 2017, Hwee Ling Lee wrote: > Dear all, > > I have T1 images collected from the 7T MRI scanner. > > I downloaded the most recent freesurfer software, and followed all > instructions to install the software before using it. > > I would like to segment the T1 data using its high resolution image, and > also to segment the hippocampal subfields. > > For command, I use this: > > recon-all -all -s <subject name> -hires -i <subject dicom T1 image frame 1 > location> > > However, I get an error message: > > cannot find $FREESURFER_HOME/average/RB_all_2008-03-26.gca > > I'm not sure what I did wrong. > > Also, how can I combine high resolution segmentation and hippocampal > subfields segmentation? > > Could someone please help? > > Thanks. > > Best regards, > Hweeling > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
