oh, this may be a version mismatch then. Which version of FS are you
using?
On Tue, 21 Nov 2017, Hwee Ling Lee wrote:
Dear Bruce,
Thanks for your reply.
I checked the folder and did not find the file that was requested.
What I have in the average folder that has 'RB*.gca' are
'RB_all_2016-05-10.vc700.gca' and
'RB_all_withskull_2016-05-10.vc700.gca'.
The other file in that folder is 'RB_all_2008-03-26.mni152.2mm.lta'.
Cheers,
Hweeling
On Nov 21, 2017 18:05, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote:
Hi Hweeling
what is FREESURFER_HOME set to in the environment? Does that file exist?
It is a
standard part of our distribution
cheers
Bruce
On Tue, 21 Nov 2017, Hwee Ling Lee wrote:
Dear all,
I have T1 images collected from the 7T MRI scanner.
I downloaded the most recent freesurfer software, and followed all
instructions to install the software before using it.
I would like to segment the T1 data using its high resolution
image, and
also to segment the hippocampal subfields.
For command, I use this:
recon-all -all -s <subject name> -hires -i <subject dicom T1 image
frame 1
location>
However, I get an error message:
cannot find $FREESURFER_HOME/average/RB_all_2008-03-26.gca
I'm not sure what I did wrong.
Also, how can I combine high resolution segmentation and hippocampal
subfields segmentation?
Could someone please help?
Thanks.
Best regards,
Hweeling
The information in this e-mail is intended only for the person to whom it
is
addressed. If you believe this e-mail was sent to you in error and the
e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in
error
but does not contain patient information, please contact the sender and
properly
dispose of the e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
