can you send us the recon-all.log?
On Wed, 22 Nov 2017, Hwee Ling Lee wrote:
Hi Bruce,
I downloaded the latest version of freesurfer, "CentOS 6 x86_64 (64b)".
Cheers,
Hweeling
On 21 November 2017 at 23:57, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
oh, this may be a version mismatch then. Which version of FS are you
using?
On Tue, 21 Nov 2017, Hwee Ling Lee wrote:
Dear Bruce,
Thanks for your reply.
I checked the folder and did not find the file that was requested.
What I have in the average folder that has 'RB*.gca' are
'RB_all_2016-05-10.vc700.gca' and
'RB_all_withskull_2016-05-10.vc700.gca'.
The other file in that folder is 'RB_all_2008-03-26.mni152.2mm.lta'.
Cheers,
Hweeling
On Nov 21, 2017 18:05, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Hweeling
what is FREESURFER_HOME set to in the environment? Does that
file
exist? It is a
standard part of our distribution
cheers
Bruce
On Tue, 21 Nov 2017, Hwee Ling Lee wrote:
Dear all,
I have T1 images collected from the 7T MRI scanner.
I downloaded the most recent freesurfer software, and
followed
all
instructions to install the software before using it.
I would like to segment the T1 data using its high
resolution
image, and
also to segment the hippocampal subfields.
For command, I use this:
recon-all -all -s <subject name> -hires -i <subject
dicom T1
image frame 1
location>
However, I get an error message:
cannot find
$FREESURFER_HOME/average/RB_all_2008-03-26.gca
I'm not sure what I did wrong.
Also, how can I combine high resolution segmentation and
hippocampal
subfields segmentation?
Could someone please help?
Thanks.
Best regards,
Hweeling
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