External Email - Use Caution Please, could you check the command line. I suspect that an error is there. Thanks. Stefano
mri_binarize --i ThalamicNuclei.v10.T1.mgz --replace-only 8130 8133 --o Left-Ventroposterior.mgz > Il 30 aprile 2020 alle 18.51 "Douglas N. Greve" <dgr...@mgh.harvard.edu> ha > scritto: > > You can use mri_binarize --i ThalamicNuclei.v10.T1.mgz --replace-only > segid segidreplace ... --o newseg.mgz > to create a new segmentation with merged segments, then using > vol2subfield with the newseg seg as --sf > > On 4/29/2020 7:57 PM, std...@virgilio.it mailto:std...@virgilio.it wrote: > > > > > > External Email - Use Caution > > > > Hi list, > > > > vol2subfield --i fmcpr.nii.gz --reg register.dof6.lta --sf > > ThalamicNuclei.v10.T1.mgz --stats stats.dat --avgwf avgwf.dat --avgwfvol > > avgwfvol.mgz --o f2subf.nii.gz > > > > extracts the time course from each thalamic subregions. > > > > If I would like to merge multiple regions (e.g. --id 8115 --id > > 8116) and extract a single time course from them, which is the way? > > > > Thanks > > > > > > Stefano > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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