External Email - Use Caution by running mri_diff --po mri/ThalamicNuclei.v10.T1.mgz L-VP.mgz I obtain diffcount 0
> Il 11 maggio 2020 alle 19.18 "Douglas N. Greve" <[email protected]> ha > scritto: > > Try running this to see if there is a difference > mri_diff --po ThalamicNuclei.v10.T1.mgz Left-Ventroposterior.mgz > Sometimes it is not easy to see a difference that is just a few voxels > > On 5/11/2020 3:02 AM, [email protected] mailto:[email protected] wrote: > > > > > > External Email - Use Caution > > > > By visualizing the output by freeview, I found that it was the same > > of ThalamicNuclei.v10.T1.mgz. > > > > Thanks > > > > > > > Il 11 maggio 2020 alle 2.19 Bruce Fischl < > > [email protected] mailto:[email protected] > ha scritto: > > > > > > > > > Hi Stefano > > > > > > can you elaborate? Why do you suspect there is an error? > > > > > > cheers > > > Bruce > > > On Mon, 11 May > > > 2020, [email protected] mailto:[email protected] wrote: > > > > > > > > > > > > > External Email - Use > > > Caution > > > > > > > > Please, could you check the command line. > > > > I suspect that an error is there. > > > > Thanks. > > > > Stefano > > > > > > > > mri_binarize --i ThalamicNuclei.v10.T1.mgz > > > > --replace-only 8130 8133 --o > > > > Left-Ventroposterior.mgz > > > > > > > > > > > > > > > > > > > > > > Il 30 aprile 2020 alle 18.51 > > > "Douglas N. Greve" > > > > < [email protected] mailto:[email protected] > > > > > ha scritto: > > > > > > > > > > > > > > > > > > You can use mri_binarize --i > > > ThalamicNuclei.v10.T1.mgz > > > > --replace-only segid segidreplace ... --o newseg.mgz > > > > to create a new segmentation with merged segments, then > > > > using > > > > vol2subfield with the newseg seg as --sf > > > > > > > > > > > > > > > > > > On 4/29/2020 7:57 PM, > > > [email protected] mailto:[email protected] wrote: > > > > > > > > > > > > > > > > > > External Email - Use > > > Caution > > > > > > > > > > > > > > > > > > Hi list, > > > > > > > > > > > > > > > > > > vol2subfield --i fmcpr.nii.gz > > > --reg register.dof6.lta --sf > > > > ThalamicNuclei.v10.T1.mgz --stats stats.dat --avgwf > > > > avgwf.dat --avgwfvol avgwfvol.mgz --o f2subf.nii.gz > > > > > > > > > > > > > > > > > > extracts the time course from > > > each thalamic subregions. > > > > > > > > > > > > > > > > > > If I would like to merge multiple > > > regions (e.g. --id 8115 > > > > --id 8116) and extract a single time course from them, > > > > which is the way? > > > > > > > > > > > > > > > > > > Thanks > > > > > > > > > > > > > > > > > > > > > > Stefano > > > > > > > > > > > > > > > > _______________________________________________ > > > > Freesurfer mailing list > > > > [email protected] > > > > mailto:[email protected] > > > > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > > > _______________________________________________ > > > > Freesurfer mailing list > > > > [email protected] > > > > mailto:[email protected] > > > > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > [email protected] > > > mailto:[email protected] > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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