Try running this to see if there is a difference
mri_diff --po ThalamicNuclei.v10.T1.mgz Left-Ventroposterior.mgz
Sometimes it is not easy to see a difference that is just a few voxels
On 5/11/2020 3:02 AM, std...@virgilio.it wrote:
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By visualizing the output by freeview, I found that it was the same
of ThalamicNuclei.v10.T1.mgz.
Thanks
Il 11 maggio 2020 alle 2.19 Bruce Fischl < fis...@nmr.mgh.harvard.edu
<mailto:fis...@nmr.mgh.harvard.edu>> ha scritto:
Hi Stefano
can you elaborate? Why do you suspect there is an error?
cheers
Bruce
On Mon, 11 May
2020, std...@virgilio.it <mailto:std...@virgilio.it> wrote:
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Please, could you check the command line.
I suspect that an error is there.
Thanks.
Stefano
mri_binarize --i ThalamicNuclei.v10.T1.mgz --replace-only 8130
8133 --o
Left-Ventroposterior.mgz
Il 30 aprile 2020 alle 18.51 "Douglas N. Greve"
< dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> ha scritto:
You can use mri_binarize --i ThalamicNuclei.v10.T1.mgz
--replace-only segid segidreplace ... --o newseg.mgz
to create a new segmentation with merged segments, then using
vol2subfield with the newseg seg as --sf
On 4/29/2020 7:57 PM, std...@virgilio.it <mailto:std...@virgilio.it>
wrote:
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Hi list,
vol2subfield --i fmcpr.nii.gz --reg register.dof6.lta --sf
ThalamicNuclei.v10.T1.mgz --stats stats.dat --avgwf
avgwf.dat --avgwfvol avgwfvol.mgz --o f2subf.nii.gz
extracts the time course from each thalamic subregions.
If I would like to merge multiple regions (e.g. --id 8115
--id 8116) and extract a single time course from them,
which is the way?
Thanks
Stefano
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