External Email - Use Caution By visualizing the output by freeview, I found that it was the same of ThalamicNuclei.v10.T1.mgz.
Thanks > Il 11 maggio 2020 alle 2.19 Bruce Fischl < fis...@nmr.mgh.harvard.edu > mailto:fis...@nmr.mgh.harvard.edu > ha scritto: > > > Hi Stefano > > can you elaborate? Why do you suspect there is an error? > > cheers > Bruce > On Mon, 11 May > 2020, std...@virgilio.it mailto:std...@virgilio.it wrote: > > > > > External Email - Use Caution > > > > Please, could you check the command line. > > I suspect that an error is there. > > Thanks. > > Stefano > > > > mri_binarize --i ThalamicNuclei.v10.T1.mgz --replace-only 8130 > > 8133 --o > > Left-Ventroposterior.mgz > > > > > > > > > > Il 30 aprile 2020 alle 18.51 "Douglas N. Greve" > > < dgr...@mgh.harvard.edu mailto:dgr...@mgh.harvard.edu > ha scritto: > > > > > > > > You can use mri_binarize --i ThalamicNuclei.v10.T1.mgz > > --replace-only segid segidreplace ... --o newseg.mgz > > to create a new segmentation with merged segments, then using > > vol2subfield with the newseg seg as --sf > > > > > > > > On 4/29/2020 7:57 PM, std...@virgilio.it > mailto:std...@virgilio.it wrote: > > > > > > > > External Email - Use Caution > > > > > > > > Hi list, > > > > > > > > vol2subfield --i fmcpr.nii.gz --reg register.dof6.lta --sf > > ThalamicNuclei.v10.T1.mgz --stats stats.dat --avgwf > > avgwf.dat --avgwfvol avgwfvol.mgz --o f2subf.nii.gz > > > > > > > > extracts the time course from each thalamic subregions. > > > > > > > > If I would like to merge multiple regions (e.g. --id 8115 > > --id 8116) and extract a single time course from them, > > which is the way? > > > > > > > > Thanks > > > > > > > > > > Stefano > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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