Just add more --replaceonly args
On 5/14/2020 10:38 AM, std...@virgilio.it wrote:
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Moreover, how can I merge, with mri_binarize, more thalamic regions?
e.g. 8204 8205 8206 8217 8218
Il 13 maggio 2020 alle 23.03 "Douglas N. Greve"
<dgr...@mgh.harvard.edu> ha scritto:
It problably means that seg 8130 does not exist in the input mgz. Can
you confirm that it does?
On 5/13/2020 12:51 PM, std...@virgilio.it <mailto:std...@virgilio.it>
wrote:
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indeed. I would like to merge two regions and extract the fMRI time
serie. if no difference is there, somewhat is wrong. the L-VP file
contains the same information of ThalamicNuclei.v10.T1.
thanks
Il 13 maggio 2020 alle 17.02 "Douglas N. Greve"
<dgr...@mgh.harvard.edu> <mailto:dgr...@mgh.harvard.edu> ha scritto:
That means there is no difference
On 5/13/2020 10:47 AM, std...@virgilio.it
<mailto:std...@virgilio.it> wrote:
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is the command line ok?
by running
mri_binarize --i ThalamicNuclei.v10.T1.mgz --replace-only 8130
8133 --o L-VP.mgz
mri_diff --po mri/ThalamicNuclei.v10.T1.mgz L-VP.mgz
I obtain
diffcount 0
Il 12 maggio 2020 alle 0.53 std...@virgilio.it
<mailto:std...@virgilio.it> ha scritto:
by running
mri_diff --po mri/ThalamicNuclei.v10.T1.mgz L-VP.mgz
I obtain
diffcount 0
Il 11 maggio 2020 alle 19.18 "Douglas N. Greve"
<dgr...@mgh.harvard.edu> <mailto:dgr...@mgh.harvard.edu> ha
scritto:
Try running this to see if there is a difference
mri_diff --po ThalamicNuclei.v10.T1.mgz Left-Ventroposterior.mgz
Sometimes it is not easy to see a difference that is just a few
voxels
On 5/11/2020 3:02 AM, std...@virgilio.it
<mailto:std...@virgilio.it> wrote:
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By visualizing the output by freeview, I found that it was the
same of ThalamicNuclei.v10.T1.mgz.
Thanks
Il 11 maggio 2020 alle 2.19 Bruce Fischl <
fis...@nmr.mgh.harvard.edu
<mailto:fis...@nmr.mgh.harvard.edu>> ha scritto:
Hi Stefano
can you elaborate? Why do you suspect there is an error?
cheers
Bruce
On Mon, 11 May
2020, std...@virgilio.it <mailto:std...@virgilio.it> wrote:
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Please, could you check the command line.
I suspect that an error is there.
Thanks.
Stefano
mri_binarize --i ThalamicNuclei.v10.T1.mgz --replace-only
8130 8133 --o
Left-Ventroposterior.mgz
Il 30 aprile 2020 alle 18.51 "Douglas N. Greve"
< dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> ha
scritto:
You can use mri_binarize --i ThalamicNuclei.v10.T1.mgz
--replace-only segid segidreplace ... --o newseg.mgz
to create a new segmentation with merged segments, then using
vol2subfield with the newseg seg as --sf
On 4/29/2020 7:57 PM, std...@virgilio.it
<mailto:std...@virgilio.it> wrote:
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Hi list,
vol2subfield --i fmcpr.nii.gz --reg register.dof6.lta --sf
ThalamicNuclei.v10.T1.mgz --stats stats.dat --avgwf
avgwf.dat --avgwfvol avgwfvol.mgz --o f2subf.nii.gz
extracts the time course from each thalamic subregions.
If I would like to merge multiple regions (e.g. --id 8115
--id 8116) and extract a single time course from them,
which is the way?
Thanks
Stefano
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