Hi Dan, I think I need a little more advice - what is the role of the script scripts/extract_dataset_part.py and the JSON files created when splitting FASTQ files in lib/galaxy/datatypes/sequence.py, and then used by the class' process_split_file method?
Why is there no JSON file created by the base data class in lib/galaxy/datatypes/data.py and no method process_split_file? Is the JSON thing part of a partial and unfinished rewrite of the splitter code? On the assumption that not all splitters bother with the JSON, I am trying a little hack to scripts/extract_dataset_part.py to abort silently if there is no JSON file: https://bitbucket.org/peterjc/galaxy-central/changeset/ebe94a2c25c3 This seems to be working with my current attempt at a FASTA splitter (not checked in yes, only partly implemented and tested). Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/