Hi Rob, When you import a workflow into a Galaxy instance, the instance must have all tools required by the workflow available in its tool panel. I've only seen this error when the workflow requires a tool that is not available, so can you let us know if this is the case?
Thanks, Greg Von Kuster On Apr 16, 2012, at 10:07 AM, Robert Chase wrote: > Hi Greg, > > After I modified the modules.py file that bug went away, but now I'm getting > a new error: > > Module galaxy.web.base.controller:420 in get_stored_workflow_steps > view > << module = module_factory.from_workflow_step( trans, step ) > #Check if tool was upgraded > step.upgrade_messages = module.check_and_update_state() > # Any connected input needs to have value DummyDataset > (these > # are not persisted so we need to do it every time)>> > step.upgrade_messages = module.check_and_update_state() > AttributeError: 'NoneType' object has no attribute 'check_and_update_state' > > -Rob > > On Mon, Apr 16, 2012 at 9:19 AM, Robert Chase <re...@channing.harvard.edu> > wrote: > Thanks Greg, > > I'll try to merge the change into my version. > > -Rob > > > On Mon, Apr 16, 2012 at 9:18 AM, Greg Von Kuster <g...@bx.psu.edu> wrote: > Hello Robert, > > Thanks for reporting this issue - it has been fixed in change set > 7038:1fdcce63a06f, which is currently available only in our central > repository. It will be available in the dist in the next update. > > Greg Von Kuster > > On Apr 13, 2012, at 5:22 PM, Robert Chase wrote: > >> Hello All, >> >> I'm pretty sure I found a bug in the main galaxy distribution. The following >> code diff shows the introduction of the line >> >> tool_version = self.__get_tool_version( trans, tool_id ) >> >> but if you look at the function definition containing that line, you see >> >> def from_workflow_step( Class, trans, step ): >> which does not half a self in it. Then we get an error. >> >> https://bitbucket.org/galaxy/galaxy-dist/diff/lib/galaxy/workflow/modules.py?diff2=e6464387ed3f&diff1=c60760713d26 >> >> -Rob >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> >> http://lists.bx.psu.edu/ > > >
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