Mark, how are you running your Galaxy instance, and have you changed the value of log_level in your universe_wsgi.ini? By default Galaxy should be provide quite verbose logging on stdout.
-- jt On Wed, Oct 10, 2012 at 2:21 PM, Mark Johnson <mjohn...@ncbi.nlm.nih.gov> wrote: > I'm trying to add CSRA (NCBI Compressed Sequence Read Archive) as a new > datatype for Galaxy. > > I've followed the instructions on the wiki, and the module seems to load OK. > csra shows up as a datatype in the upload view. > > But the upload fails, and the uploaded file size is always 0. The actual > file I upload is 156k. > > Here are my changes: > > In binary.py: > http://pastie.org/5030960 > > In upload.py (following the example at > http://dev.list.galaxyproject.org/Binary-datatypes-td4135969.html): > http://pastie.org/5030967 > > datatypes_conf.xml: > http://pastie.org/5030970 > > I also have a very hard time debugging Galaxy. Where can I look for an error > stream that explains what it's doing? paster.log only tells me the HTTP > traffic. I need to know where it is failing to know where to look. And my > code needs to be able to, at the very least, print debug messages. How do > people generally do that in Galaxy? > > Thanks > > --Mark Johnson > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
