Hi Bjoern, Nate, That's good to hear. Sorry, I have been otherwise engaged for the last few months, and was unable to test this. Hoping to get back onto Galaxy stuff again in a month or so!
cheers, Simon > -----Original Message----- > From: Nate Coraor [mailto:n...@bx.psu.edu] > Sent: Saturday, 15 February 2014 4:37 a.m. > To: Björn Grüning > Cc: Guest, Simon; galaxy-dev@lists.bx.psu.edu > Subject: Re: [galaxy-dev] Difficulty dispatching toolshed tool jobs via > job_conf.xml > > Hi Björn, > > It should be fixed, the problem was with tools with uppercase characters > in the guid: > > https://bitbucket.org/galaxy/galaxy-central/commits/0b955e54451c/ > > > --nate > > > On Thu, Feb 13, 2014 at 2:38 AM, Björn Grüning <bjoern.gruen...@gmail.com> > wrote: > > > Hi Nate & Simon, > > was that solved? I think it's still not working? Or is that a > regression. In particular shed_host/repos/owner/repo/tool_id is not > working, and that is what is 90% needed, or? > > Thanks, > Bjoern > > > > From: Nate Coraor [mailto:n...@bx.psu.edu] > > > > > This should work, it looks like there may be a bug with handling > tool shed > > > IDs when determining job destinations. You are actually supposed > to be > > > able to use any of: > > > > > > shed_host/repos/owner/repo/tool_id/version > > > shed_host/repos/owner/repo/tool_id > > > tool_id > > > > > > I'll take a look at this as soon as possible. One thing you > might try in > > > the short term is using the percent encoded tool id in the > <tool> tag in > > > job_conf.xml: > > > > Hi Nate, > > > > Using the percent encoded form was the first thing I tried (before > emailing the list). It didn't make any difference. I think there's > another reason it's not picking it up. Thanks for looking into this. > > > > cheers, > > Simon > > > > > > > ======================================================================= > > Attention: The information contained in this message and/or > attachments > > from AgResearch Limited is intended only for the persons or > entities > > to which it is addressed and may contain confidential and/or > privileged > > material. Any review, retransmission, dissemination or other use > of, or > > taking of any action in reliance upon, this information by persons > or > > entities other than the intended recipients is prohibited by > AgResearch > > Limited. If you have received this message in error, please notify > the > > sender immediately. > > > ======================================================================= > > > > ___________________________________________________________ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ > > > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ > > > > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
