Hi Nate,

without a trailing slash it works. I created PR #339, that removes trailing slashes from tool IDs.


Thanks!
Bjoern


Hi Björn,

Please try it without the trailing slash on the tool ID.

--nate


On Wed, Feb 26, 2014 at 11:28 AM, Björn Grüning
<bjoern.gruen...@gmail.com>wrote:

Hi Nate,

sorry to bother you again, but that issue is still not fixed for me.

The following is supposed to work, or?
         <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/
ncbi_blastn_wrapper/" destination="24_cores_24G" />
         <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/
ncbi_blastx_wrapper/" destination="24_cores_24G" />
         <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/
ncbi_tblastn_wrapper/" destination="24_cores_24G" />
         <tool id="ncbi_blastp_wrapper" destination="24_cores_24G" />
         <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/
ncbi_rpsblast_wrapper/" destination="24_cores_24G" />
         <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/
ncbi_tblastx_wrapper/" destination="24_cores_24G" />
         <tool id="toolshed.g2.bx.psu.edu/repos/peterjc/blast2go/
blast2go/0.0.6" destination="20G_memory"/>


Thanks,
Bjoern


Am 14.02.2014 16:37, schrieb Nate Coraor:

  Hi Björn,

It should be fixed, the problem was with tools with uppercase characters
in
the guid:

      https://bitbucket.org/galaxy/galaxy-central/commits/0b955e54451c/

--nate


On Thu, Feb 13, 2014 at 2:38 AM, Björn Grüning <bjoern.gruen...@gmail.com
wrote:

  Hi Nate & Simon,

was that solved? I think it's still not working? Or is that a
regression. In particular shed_host/repos/owner/repo/tool_id is not
working, and that is what is 90% needed, or?

Thanks,
Bjoern

  From: Nate Coraor [mailto:n...@bx.psu.edu]


  This should work, it looks like there may be a bug with handling tool

shed

IDs when determining job destinations. You are actually supposed to be
able to use any of:

    shed_host/repos/owner/repo/tool_id/version
    shed_host/repos/owner/repo/tool_id
    tool_id

I'll take a look at this as soon as possible.  One thing you might try

in

the short term is using the percent encoded tool id in the <tool> tag

in

job_conf.xml:


Hi Nate,

Using the percent encoded form was the first thing I tried (before

emailing the list).  It didn't make any difference.  I think there's
another reason it's not picking it up.  Thanks for looking into this.


cheers,
Simon


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