Hi Björn,

Please try it without the trailing slash on the tool ID.

--nate


On Wed, Feb 26, 2014 at 11:28 AM, Björn Grüning
<bjoern.gruen...@gmail.com>wrote:

> Hi Nate,
>
> sorry to bother you again, but that issue is still not fixed for me.
>
> The following is supposed to work, or?
>         <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/
> ncbi_blastn_wrapper/" destination="24_cores_24G" />
>         <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/
> ncbi_blastx_wrapper/" destination="24_cores_24G" />
>         <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/
> ncbi_tblastn_wrapper/" destination="24_cores_24G" />
>         <tool id="ncbi_blastp_wrapper" destination="24_cores_24G" />
>         <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/
> ncbi_rpsblast_wrapper/" destination="24_cores_24G" />
>         <tool id="toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/
> ncbi_tblastx_wrapper/" destination="24_cores_24G" />
>         <tool id="toolshed.g2.bx.psu.edu/repos/peterjc/blast2go/
> blast2go/0.0.6" destination="20G_memory"/>
>
>
> Thanks,
> Bjoern
>
>
> Am 14.02.2014 16:37, schrieb Nate Coraor:
>
>  Hi Björn,
>>
>> It should be fixed, the problem was with tools with uppercase characters
>> in
>> the guid:
>>
>>      https://bitbucket.org/galaxy/galaxy-central/commits/0b955e54451c/
>>
>> --nate
>>
>>
>> On Thu, Feb 13, 2014 at 2:38 AM, Björn Grüning <bjoern.gruen...@gmail.com
>> >wrote:
>>
>>  Hi Nate & Simon,
>>>
>>> was that solved? I think it's still not working? Or is that a
>>> regression. In particular shed_host/repos/owner/repo/tool_id is not
>>> working, and that is what is 90% needed, or?
>>>
>>> Thanks,
>>> Bjoern
>>>
>>>  From: Nate Coraor [mailto:n...@bx.psu.edu]
>>>>>
>>>>
>>>>  This should work, it looks like there may be a bug with handling tool
>>>>>
>>>> shed
>>>
>>>> IDs when determining job destinations. You are actually supposed to be
>>>>> able to use any of:
>>>>>
>>>>>    shed_host/repos/owner/repo/tool_id/version
>>>>>    shed_host/repos/owner/repo/tool_id
>>>>>    tool_id
>>>>>
>>>>> I'll take a look at this as soon as possible.  One thing you might try
>>>>>
>>>> in
>>>
>>>> the short term is using the percent encoded tool id in the <tool> tag
>>>>>
>>>> in
>>>
>>>> job_conf.xml:
>>>>>
>>>>
>>>> Hi Nate,
>>>>
>>>> Using the percent encoded form was the first thing I tried (before
>>>>
>>> emailing the list).  It didn't make any difference.  I think there's
>>> another reason it's not picking it up.  Thanks for looking into this.
>>>
>>>>
>>>> cheers,
>>>> Simon
>>>>
>>>>
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>>>
>>>
>>>
>>
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