We've had the same problem since updating from the April 2013 stable to Feb 2014 stable. Our jobs are going off to a slurm cluster via the SlurmJobRunner plugin (though this was happening with the DRMAAJobRunner plugin too, if I remember right). Removing pending datasets occasionally removes the entry in Admin/Jobs, but not reliably, and regardless the jobs stay queued in slurm with no noise in galaxy.log at DEBUG or higher. We're not using parallelism either.
I noticed this around the same time as I noticed the new in-progress animation in the history pane; perhaps there's an ajax-y callback that's not firing? Otherwise I'd expect to see something in the log about Galaxy at least trying to cancel the job. On Tue, Mar 11, 2014 at 10:57 AM, Ravi Alla <ravi.a...@berkeley.edu> wrote: > Hi All, > I've been able to submit jobs to the cluster through galaxy, it works great. > But when the job is in queue to run (it is gray in the galaxy history pane) > and I cancel the job, it still remains in queue on the cluster. Why does this > happen? How can I delete the jobs in queue as well? I tried qdel <job_id> as > galaxy user but it says I am not authenticated to delete the job. > Any help would be greatly appreciated. > Thanks > Ravi. > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ -- Brian Claywell, Systems Analyst/Programmer Fred Hutchinson Cancer Research Center bclay...@fhcrc.org ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/