The cleanup scripts enforce a sort of "lifetime" for the datasets.
The first time they're run, they may mark a dataset as deleted and also
reset the update time and you'll have to wait N days for the next stage of
The next time they're run, or if a dataset has already been marked as
deleted, the actual file removal happens and purged is set to true (if it
You can manually pass in '-d 0' to force removal of datasets recently
marked as deleted.
The purge scripts do not check 'allow_user_dataset_purge', of course.
On Tue, Mar 18, 2014 at 11:50 AM, Carl Eberhard <carlfeberh...@gmail.com>wrote:
> I believe it's a (BAD) silent failure mode in the server code.
> If I understand correctly, the purge request isn't coughing an error when
> it gets to the 'allow_user_dataset_purge' check and instead is silently
> marking (or re-marking) the datasets as deleted.
> I would rather it fail with a 403 error if purge is explicitly requested.
> That said, it of course would be better to remove the purge operation
> based on the configuration then to show an error after we've found you
> can't do the operation. The same holds true for the 'permanently remove
> this dataset' link in deleted datasets.
> I'll see if I can find out the answer to your question on the cleanup
> On Tue, Mar 18, 2014 at 10:49 AM, Peter Cock <p.j.a.c...@googlemail.com>wrote:
>> On Tue, Mar 18, 2014 at 2:14 PM, Carl Eberhard <carlfeberh...@gmail.com>
>> > Thanks, Ravi & Peter
>> > I've added a card to get the allow_user_dataset_purge options into the
>> > client and to better show the viable options to the user:
>> > https://trello.com/c/RCPZ9zMF
>> Thanks Carl - so this was a user interface bug, showing the user
>> non-functional permanent delete (purge) options. That's clearer now.
>> In this situation can the user just 'delete', and wait N days for
>> the cleanup scripts to actually purge the files and free the space?
>> (It seems N=10 in scripts/cleanup/purge_*.sh at least, elsewhere
>> like the underlying Python script the default looks like N=60).
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: