Thanks for tracking down the problem - it sounds like it is a Galaxy
bug then so I have created a Trello card
(https://trello.com/c/bNEKfOWR).

-John

On Wed, Jul 30, 2014 at 7:06 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> On Wed, Jul 30, 2014 at 11:52 AM, Ulf Schaefer <ulf.schae...@phe.gov.uk> 
> wrote:
>> Dear Nate, dear Peter
>>
>> Again, sorry for the delay in replying.
>>
>> Yes I can. It looks like this
>>
>> [galaxy@srv ~]$ cat /galaxy/database/files/081/dataset_81002.dat
>> [galaxy@srv ~]$ ls /galaxy/database/files/081/dataset_81002_files/
>> blastdb.nhd  blastdb.nhi  blastdb.nhr  blastdb.nin  blastdb.nog
>> blastdb.nsd  blastdb.nsi  blastdb.nsq
>
> Good. Thanks for confirming that.
>
>> I think the simplest solution would be to put something in the primary
>> file. Just a short string that gets the file size above 0.
>
> That won't help with all the existing datasets out there - I think we
> rather need to fix something in the Galaxy code for composite files...
>
>> I personally have followed you initial suggestion and made the dbs
>> available globally via the .loc file.
>>
>> Thanks again
>> Ulf
>
> Great.
>
> Peter
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