On Wed, Dec 10, 2014 at 4:31 PM, Wang, Yu <[email protected]> wrote: > Hi, I am testing Basic Protocol 1 on my local galaxy instance. But Join > didn't work. What did I do wrong? > I installed join from galaxy main tool shed, bx_python_0_7 was installed but > with installation Status "missing tool dependencies". > >... > Traceback (most recent call last): > File > "/home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/join/de21bdbb8d28/join/gops_join.py", > line 13, in <module> > from bx.intervals import * > ImportError: No module named bx.intervals
It looks like the automated installation of bx python failed somehow. Looking at the package, it will attempt to install NumPy 1.7.1 https://toolshed.g2.bx.psu.edu/view/devteam/package_bx_python_0_7 Galaxy dev team, why isn't this declaring a dependency on: https://toolshed.g2.bx.psu.edu/view/iuc/package_numpy_1_7 Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
