Looks like this - https://github.com/clarete/curdling/issues/19
I think you somehow need to install the package svn on your machine - if you have root on that machine the command might be something like "sudo zypper install svn" or may it is "sudo zypper install subversion". If you don't have root on the machine I would ask the operating system maintainer or try to compile and install svn locally and make it available to Galaxy. Hope this helps, -John On Fri, Dec 12, 2014 at 7:14 AM, Wang, Yu <[email protected]> wrote: > > Hi, I am running galaxy on SLSE11, when I tried to install bumpy 1.7.1, I > got the following error. > Can anyone point what goes wrong here? > > > Error Running from numpy source directory. > /bin/sh: svnversion: command not found > > /home/wang/galaxy-dist/database/tmp/tmp-toolshed-mtdMR9ITC/numpy-1.7.1/numpy/distutils/system_info.py:1494: > UserWarning: > Atlas (http://math-atlas.sourceforge.net/) libraries not found. > Directories to search for the libraries can be specified in the > numpy/distutils/site.cfg file (section [atlas]) or by setting > the ATLAS environment variable. > warnings.warn(AtlasNotFoundError.__doc__) > > /home/wang/galaxy-dist/database/tmp/tmp-toolshed-mtdMR9ITC/numpy-1.7.1/numpy/distutils/system_info.py:1503: > UserWarning: > Blas (http://www.netlib.org/blas/) libraries not found. > Directories to search for the libraries can be specified in the > numpy/distutils/site.cfg file (section [blas]) or by setting > the BLAS environment variable. > warnings.warn(BlasNotFoundError.__doc__) > > /home/wang/galaxy-dist/database/tmp/tmp-toolshed-mtdMR9ITC/numpy-1.7.1/numpy/distutils/system_info.py:1506: > UserWarning: > Blas (http://www.netlib.org/blas/) sources not found. > Directories to search for the sources can be specified in the > numpy/distutils/site.cfg file (section [blas_src]) or by setting > the BLAS_SRC environment variable. > warnings.warn(BlasSrcNotFoundError.__doc__) > /bin/sh: svnversion: command not found > > /home/wang/galaxy-dist/database/tmp/tmp-toolshed-mtdMR9ITC/numpy-1.7.1/numpy/distutils/system_info.py:1408: > UserWarning: > Atlas (http://math-atlas.sourceforge.net/) libraries not found. > Directories to search for the libraries can be specified in the > numpy/distutils/site.cfg file (section [atlas]) or by setting > the ATLAS environment variable. > warnings.warn(AtlasNotFoundError.__doc__) > > /home/wang/galaxy-dist/database/tmp/tmp-toolshed-mtdMR9ITC/numpy-1.7.1/numpy/distutils/system_info.py:1419: > UserWarning: > Lapack (http://www.netlib.org/lapack/) libraries not found. > Directories to search for the libraries can be specified in the > numpy/distutils/site.cfg file (section [lapack]) or by setting > the LAPACK environment variable. > warnings.warn(LapackNotFoundError.__doc__) > > /home/wang/galaxy-dist/database/tmp/tmp-toolshed-mtdMR9ITC/numpy-1.7.1/numpy/distutils/system_info.py:1422: > UserWarning: > Lapack (http://www.netlib.org/lapack/) sources not found. > Directories to search for the sources can be specified in the > numpy/distutils/site.cfg file (section [lapack_src]) or by setting > the LAPACK_SRC environment variable. > warnings.warn(LapackSrcNotFoundError.__doc__) > error: must supply either home or prefix/exec-prefix -- not both > > > Cheers, > Yu > > di29her > [email protected] > > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
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