Hey guys,
I successfully fixed my problem.
Here's the solution if you would like to know:
1. download zlib-1.2.8.tar.gz
2. ./configure --prefix=/usr/local/zlib-1.2.8
3. make
4. make install
5. add the following in the file config/local_env.sh
export
LD_LIBRARY_PATH=/usr/local/zlib-1.2.8${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}
Edgar Fernandez
System Administrator (Linux)
Direction Générale des Technologies de l'Information et de la Communication
Université de Montréal
PAVILLON ROGER-GAUDRY, bureau X-210
I Bur. : 1-514-343-6111 poste 16568
-----Original Message-----
From: Peter Cock [mailto:p.j.a.c...@googlemail.com]
Sent: May-26-16 3:32 AM
To: Fernandez Edgar <edgar.fernan...@umontreal.ca>; Nate Coraor
<n...@bx.psu.edu>
Cc: galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] not sure what I can do about this...
Sorry Edgar,
It looks like something else is causing this error (and my guess about
different versions of Linux on Galaxy and the cluster was
wrong):
ImportError:
/home/galaxy/galaxy-v16.01/.venv/lib/python2.7/site-packages/pysam/libchtslib.so:
undefined symbol: gzopen64
It may be important how the pysam wheel was compiled, perhaps Nate may be able
to comment (CC'd).
Peter
On Wed, May 25, 2016 at 12:40 PM, Fernandez Edgar
<edgar.fernan...@umontreal.ca> wrote:
> Hello Peter,
>
> For now, my new installation of galaxy v16.01 is on one test desktop running
> Oracle Linux 6.
> Before changing my production installation, I'm doing my due diligent.
>
> Let me know what you think...
>
> Edgar Fernandez
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