Oops. Good to know. Thanks. Austin
On Fri, May 6, 2011 at 6:02 PM, Sean Davis <sdav...@mail.nih.gov> wrote: > IGV reads BAM files just fine; no need to convert to SAM. > > Sean > > On Fri, May 6, 2011 at 8:45 PM, Austin Paul <austi...@usc.edu> wrote: > >> There are many ways. I typically use IGV. It needs a sam file, so I >> first convert the bam to sam in galaxy, then download the sam file. In IGV, >> I upload the reference and the sam file, then use IGVtools to index the sam >> file, then I can visualize the data. >> >> Austin >> On Fri, May 6, 2011 at 5:30 PM, <puvan...@umn.edu> wrote: >> >>> Hello >>> >>> I was able to run RNA seq data against a custom build genome. How can I >>> visualize the results. I tried via trackster and unfortunately I couldn't. >>> Can you help me? >>> >>> >>> Thanks >>> >>> Sumathy >>> >>> ___________________________________________________________ >>> The Galaxy User list should be used for the discussion of >>> Galaxy analysis and other features on the public server >>> at usegalaxy.org. Please keep all replies on the list by >>> using "reply all" in your mail client. For discussion of >>> local Galaxy instances and the Galaxy source code, please >>> use the Galaxy Development list: >>> >>> http://lists.bx.psu.edu/listinfo/galaxy-dev >>> >>> To manage your subscriptions to this and other Galaxy lists, >>> please use the interface at: >>> >>> http://lists.bx.psu.edu/ >>> >> >> >
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
