Hi
Thank you! yes, your guess is correct. Now it works.
Sumathy
On May 7 2011, Jeremy Goecks wrote:
Sumathy,
It sounds like you're on the right track. To visualize data for a custom
build in Trackster, you need to create a custom build and use that in
Trackster:
(1) using the top tabs in Galaxy, go to User --> Custom Builds;
(2) add a new build with the length info as follows:
<contig_name> <length>
Important note: you'll need to make sure that your contig name matches the
one used in your fasta file. This is my best guess about what's causing
problems for you.
(3) Create a Trackster visualization using the custom build and add your
dataset.
Let us know if you have more questions/problems.
Thanks,
J.
On May 6, 2011, at 10:43 PM, <puvan...@umn.edu> wrote:
Hi
I may be doing in a wrong way. I clicked trackster and I added the
custom build genome. Since it is a very small genome (~2kb), I considered
this as a single contig. Then I cliked "add tracks" and added my data file.
But I got a message "no data for this contig. Whenever I used built in
genomes I did not have any problem. I guess I am doing something wrong
here.
Sumathy
On May 6 2011, Jeremy Goecks wrote:
Sumathy,
What kind of problems are you having with Trackster?
J.
On May 6, 2011, at 8:30 PM, <puvan...@umn.edu> wrote:
Hello
I was able to run RNA seq data against a custom build genome. How can I
visualize the results. I tried via trackster and unfortunately I couldn't.
Can you help me?
Thanks
Sumathy
___________________________________________________________
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--
Sumathy Puvanendiran
Graduate student
--
Sumathy Puvanendiran
Graduate student
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
