Dear Dave, Victor,
Is it possible to simply use the drmma job runner with the condor drmma lib.so?
Thanks!
Oren

On 9/22/2011 3:21 PM, Victor Ruotti wrote:
Hi Dave,
That was me!
I'm currently talking with the condor folks here in Madison WI.
It would be great to get galaxy going with Condor since condor nows forms part of red hat.

Besides the existing available docs that you listed below who do you think would be best as a contact for questions regarding this implementation?
best,
Victor

On Sep 21, 2011, at 12:16 PM, Dave Clements wrote:

Hi Oren,

I had no idea so I went to the Galaxy mailing list archive @ Nabble (http://gmod.827538.n3.nabble.com/Galaxy-f829901.html) and searched for Condor (http://gmod.827538.n3.nabble.com/template/NamlServlet.jtp?macro=search_page&node=829901&query=condor <http://gmod.827538.n3.nabble.com/template/NamlServlet.jtp?macro=search_page&node=829901&query=condor>). It appears that Ravi Madduri @ Argonne has done some work with this.

I was also at a meeting in March with someone from Wisconsin (where I think Condor is currently developed) and they indicated their might be interest in helping Galaxy work with Condor. I/you can pursue this option as well.

Dave C.





On Wed, Sep 21, 2011 at 9:38 AM, Oren Livne <li...@uchicago.edu <mailto:li...@uchicago.edu>> wrote:

    Dear Dave,

    This was very useful. Thank you so much. Specifically, I am
    trying to integrate Galaxy with Condor, which supports DRMAA. Is
    there an existing Condor job runner implementation, or any useful
    code for submitting Galaxy jobs to Condor?

    Thanks!

    Oren

    On 9/20/2011 12:21 PM, Dave Clements wrote:
    Hi Oren,

    This book chapter
    http://userwww.service.emory.edu/~eafgan/content/Galaxy_eScienceGateway.pdf
    
<http://userwww.service.emory.edu/%7Eeafgan/content/Galaxy_eScienceGateway.pdf>,
    includes a high-level overview of Galaxy.  (Note: that chapter
    will be copied to the wiki soon.)

    There is some API documentation.
    ~/scripts/api/README,
    ~/scripts/api/workflow_
    execute.py and
    ~/scripts/api/example_watch_folder.py  in the distribution
    
http://wiki.g2.bx.psu.edu/News%20Briefs/2010_07_16#Initial_implementation_of_the_Galaxy_Web_API
    http://wiki.g2.bx.psu.edu/News%20Briefs/2011_08_30#API
    http://wiki.g2.bx.psu.edu/Events/GCC2011 (/Galaxy Deployment and
    API/ presentation)
    http://wiki.g2.bx.psu.edu/Admin/Sample%20Tracking/Next%20Gen
    http://wiki.g2.bx.psu.edu/Events/GCC2011/Workflows%20and%20API

    Sometime in the next week I'll compile all this into a single
    wiki page.

    As far as I know there is no "How to write a runner for Galaxy"
    document.  The closest we have is
    http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster and
    
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Web%20Application%20Scaling

    Hope this helps,

    Dave C.


    On Mon, Sep 19, 2011 at 9:51 AM, Oren Livne <li...@uchicago.edu
    <mailto:li...@uchicago.edu>> wrote:

        Dear All,

        I am a software developer, new to Galaxy. Is there a
        detailed document about the Galaxy code architecture, API,
        what runners are, and how to write a runner?

        I am especially interested in integrating Galaxy with an
        external scheduler software (I am aware of Galaxy's
        scheduling capabilities). I'd like to intercept Galaxy
        workflows and send their object model to my scheduler. I
        could not find this information on the Galaxy Wiki.

        Thank you so much in advance,
        Oren Livne
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org <http://usegalaxy.org>. Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

http://lists.bx.psu.edu/


___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

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