Hi Oren, I had no idea so I went to the Galaxy mailing list archive @ Nabble ( http://gmod.827538.n3.nabble.com/Galaxy-f829901.html) and searched for Condor ( http://gmod.827538.n3.nabble.com/template/NamlServlet.jtp?macro=search_page&node=829901&query=condor). It appears that Ravi Madduri @ Argonne has done some work with this.
I was also at a meeting in March with someone from Wisconsin (where I think Condor is currently developed) and they indicated their might be interest in helping Galaxy work with Condor. I/you can pursue this option as well. Dave C. On Wed, Sep 21, 2011 at 9:38 AM, Oren Livne <li...@uchicago.edu> wrote: > Dear Dave, > > This was very useful. Thank you so much. Specifically, I am trying to > integrate Galaxy with Condor, which supports DRMAA. Is there an existing > Condor job runner implementation, or any useful code for submitting Galaxy > jobs to Condor? > > Thanks! > > Oren > > On 9/20/2011 12:21 PM, Dave Clements wrote: > > Hi Oren, > > This book chapter > http://userwww.service.emory.edu/~eafgan/content/Galaxy_eScienceGateway.pdf, > includes a high-level overview of Galaxy. (Note: that chapter will be > copied to the wiki soon.) > > There is some API documentation. > ~/scripts/api/README, > ~/scripts/api/workflow_ > execute.py and > ~/scripts/api/example_watch_folder.py in the distribution > > http://wiki.g2.bx.psu.edu/News%20Briefs/2010_07_16#Initial_implementation_of_the_Galaxy_Web_API > http://wiki.g2.bx.psu.edu/News%20Briefs/2011_08_30#API > http://wiki.g2.bx.psu.edu/Events/GCC2011 (*Galaxy Deployment and > API*presentation) > http://wiki.g2.bx.psu.edu/Admin/Sample%20Tracking/Next%20Gen > http://wiki.g2.bx.psu.edu/Events/GCC2011/Workflows%20and%20API > > Sometime in the next week I'll compile all this into a single wiki page. > > As far as I know there is no "How to write a runner for Galaxy" document. > The closest we have is > http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster and > > http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Web%20Application%20Scaling > > Hope this helps, > > Dave C. > > > On Mon, Sep 19, 2011 at 9:51 AM, Oren Livne <li...@uchicago.edu> wrote: > >> Dear All, >> >> I am a software developer, new to Galaxy. Is there a detailed document >> about the Galaxy code architecture, API, what runners are, and how to write >> a runner? >> >> I am especially interested in integrating Galaxy with an external >> scheduler software (I am aware of Galaxy's scheduling capabilities). I'd >> like to intercept Galaxy workflows and send their object model to my >> scheduler. I could not find this information on the Galaxy Wiki. >> >> Thank you so much in advance, >> Oren Livne >> ___________________________________________________________ >> The Galaxy User list should be used for the discussion of >> Galaxy analysis and other features on the public server >> at usegalaxy.org. Please keep all replies on the list by >> using "reply all" in your mail client. For discussion of >> local Galaxy instances and the Galaxy source code, please >> use the Galaxy Development list: >> >> http://lists.bx.psu.edu/listinfo/galaxy-dev >> >> To manage your subscriptions to this and other Galaxy lists, >> please use the interface at: >> >> http://lists.bx.psu.edu/ >> > > > > -- > http://galaxyproject.org/ > http://getgalaxy.org/ > http://usegalaxy.org/ > http://galaxyproject.org/wiki/ > > > -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://galaxyproject.org/wiki/
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/