Oren,

I do believe some folks have done this, I am a bit surprised none have
replied.  But yes, since Condor supports DRMAA, you should be able to
point $DRMAA_LIBRARY_PATH at Condor's libdrmaa.so, enable the drmaa
runner, and try it out.

--nate

Oren Livne wrote:
> Dear Dave, Victor,
> Is it possible to simply use the drmma job runner with the condor
> drmma lib.so?
> Thanks!
> Oren
> 
> On 9/22/2011 3:21 PM, Victor Ruotti wrote:
> >Hi Dave,
> >That was me!
> >I'm currently talking with the condor folks here in Madison WI.
> >It would be great to get galaxy going with Condor since condor
> >nows forms part of red hat.
> >
> >Besides the existing available docs that you listed below who do
> >you think would be best as a contact for questions regarding this
> >implementation?
> >best,
> >Victor
> >
> >On Sep 21, 2011, at 12:16 PM, Dave Clements wrote:
> >
> >>Hi Oren,
> >>
> >>I had no idea so I went to the Galaxy mailing list archive @
> >>Nabble (http://gmod.827538.n3.nabble.com/Galaxy-f829901.html)
> >>and searched for Condor 
> >>(http://gmod.827538.n3.nabble.com/template/NamlServlet.jtp?macro=search_page&node=829901&query=condor
> >> 
> >><http://gmod.827538.n3.nabble.com/template/NamlServlet.jtp?macro=search_page&node=829901&query=condor>).
> >>It appears that Ravi Madduri @ Argonne has done some work with
> >>this.
> >>
> >>I was also at a meeting in March with someone from Wisconsin
> >>(where I think Condor is currently developed) and they indicated
> >>their might be interest in helping Galaxy work with Condor.
> >>I/you can pursue this option as well.
> >>
> >>Dave C.
> >>
> >>
> >>
> >>
> >>
> >>On Wed, Sep 21, 2011 at 9:38 AM, Oren Livne <li...@uchicago.edu
> >><mailto:li...@uchicago.edu>> wrote:
> >>
> >>    Dear Dave,
> >>
> >>    This was very useful. Thank you so much. Specifically, I am
> >>    trying to integrate Galaxy with Condor, which supports DRMAA. Is
> >>    there an existing Condor job runner implementation, or any useful
> >>    code for submitting Galaxy jobs to Condor?
> >>
> >>    Thanks!
> >>
> >>    Oren
> >>
> >>    On 9/20/2011 12:21 PM, Dave Clements wrote:
> >>>    Hi Oren,
> >>>
> >>>    This book chapter
> >>>    
> >>> http://userwww.service.emory.edu/~eafgan/content/Galaxy_eScienceGateway.pdf
> >>>    
> >>> <http://userwww.service.emory.edu/%7Eeafgan/content/Galaxy_eScienceGateway.pdf>,
> >>>    includes a high-level overview of Galaxy.  (Note: that chapter
> >>>    will be copied to the wiki soon.)
> >>>
> >>>    There is some API documentation.
> >>>    ~/scripts/api/README,
> >>>    ~/scripts/api/workflow_
> >>>    execute.py and
> >>>    ~/scripts/api/example_watch_folder.py  in the distribution
> >>>    
> >>> http://wiki.g2.bx.psu.edu/News%20Briefs/2010_07_16#Initial_implementation_of_the_Galaxy_Web_API
> >>>    http://wiki.g2.bx.psu.edu/News%20Briefs/2011_08_30#API
> >>>    http://wiki.g2.bx.psu.edu/Events/GCC2011 (/Galaxy Deployment and
> >>>    API/ presentation)
> >>>    http://wiki.g2.bx.psu.edu/Admin/Sample%20Tracking/Next%20Gen
> >>>    http://wiki.g2.bx.psu.edu/Events/GCC2011/Workflows%20and%20API
> >>>
> >>>    Sometime in the next week I'll compile all this into a single
> >>>    wiki page.
> >>>
> >>>    As far as I know there is no "How to write a runner for Galaxy"
> >>>    document.  The closest we have is
> >>>    http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster and
> >>>    
> >>> http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Web%20Application%20Scaling
> >>>
> >>>    Hope this helps,
> >>>
> >>>    Dave C.
> >>>
> >>>
> >>>    On Mon, Sep 19, 2011 at 9:51 AM, Oren Livne <li...@uchicago.edu
> >>>    <mailto:li...@uchicago.edu>> wrote:
> >>>
> >>>        Dear All,
> >>>
> >>>        I am a software developer, new to Galaxy. Is there a
> >>>        detailed document about the Galaxy code architecture, API,
> >>>        what runners are, and how to write a runner?
> >>>
> >>>        I am especially interested in integrating Galaxy with an
> >>>        external scheduler software (I am aware of Galaxy's
> >>>        scheduling capabilities). I'd like to intercept Galaxy
> >>>        workflows and send their object model to my scheduler. I
> >>>        could not find this information on the Galaxy Wiki.
> >>>
> >>>        Thank you so much in advance,
> >>>        Oren Livne
> >>>        ___________________________________________________________
> >>>        The Galaxy User list should be used for the discussion of
> >>>        Galaxy analysis and other features on the public server
> >>>        at usegalaxy.org <http://usegalaxy.org/>.  Please keep all
> >>>        replies on the list by
> >>>        using "reply all" in your mail client.  For discussion of
> >>>        local Galaxy instances and the Galaxy source code, please
> >>>        use the Galaxy Development list:
> >>>
> >>>        http://lists.bx.psu.edu/listinfo/galaxy-dev
> >>>
> >>>        To manage your subscriptions to this and other Galaxy lists,
> >>>        please use the interface at:
> >>>
> >>>        http://lists.bx.psu.edu/
> >>>
> >>>
> >>>
> >>>
> >>>    --     http://galaxyproject.org/
> >>>    http://getgalaxy.org/
> >>>    http://usegalaxy.org/
> >>>    http://galaxyproject.org/wiki/
> >>>
> >>
> >>
> >>
> >>
> >>-- 
> >>http://galaxyproject.org/
> >>http://getgalaxy.org/
> >>http://usegalaxy.org/
> >>http://galaxyproject.org/wiki/
> >>
> >>___________________________________________________________
> >>The Galaxy User list should be used for the discussion of
> >>Galaxy analysis and other features on the public server
> >>at usegalaxy.org <http://usegalaxy.org>.  Please keep all
> >>replies on the list by
> >>using "reply all" in your mail client.  For discussion of
> >>local Galaxy instances and the Galaxy source code, please
> >>use the Galaxy Development list:
> >>
> >>http://lists.bx.psu.edu/listinfo/galaxy-dev
> >>
> >>To manage your subscriptions to this and other Galaxy lists,
> >>please use the interface at:
> >>
> >>http://lists.bx.psu.edu/
> >
> 

> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
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> at usegalaxy.org.  Please keep all replies on the list by
> using "reply all" in your mail client.  For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
> 
>   http://lists.bx.psu.edu/listinfo/galaxy-dev
> 
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
> 
>   http://lists.bx.psu.edu/

___________________________________________________________
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