Ok, I'll work on installing this... On Tue, Apr 24, 2012 at 4:08 PM, Jennifer Jackson <j...@bx.psu.edu> wrote: > Thanks Peter, > > Excellent point. From there, the "Cut" tool could be used to reorganize the > output to exactly match that of the 13-column regular megablast output. So, > no external data needed, no tool modifications needed. > > This can't be done on the main public Galaxy instance as BLAST+ is not > available there, but for any local/cloud instance this is an alternative > certainly work testing. > > Best, > > Jen > Galaxy team > > > On 4/24/12 2:36 PM, Peter Cock wrote: >> >> On Tue, Apr 24, 2012 at 10:24 PM, Jennifer Jackson<j...@bx.psu.edu> wrote: >>> >>> >>> ..., using >>> the BLAST+ BLASTN megablast wrapper that Peter authored, in a local or >>> cloud >>> instance, would be the best immediate remedy (this version has the >>> standard >>> 12 column output). Sequence length data could always be obtained from >>> Genbank and added into these results using other Galaxy tools (column >>> join, >>> etc.). >> >> >> Getting the query and match sequence lengths is even simpler that >> that with the BLAST+ wrappers - just select the "extended" tabular output. >> Of course, you'll need to adjust the downstream analysis to take into >> account the different column numbers. >> >> Peter > > > -- > Jennifer Jackson > http://galaxyproject.org
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