Ok, I'll work on installing this...

On Tue, Apr 24, 2012 at 4:08 PM, Jennifer Jackson <j...@bx.psu.edu> wrote:
> Thanks Peter,
> Excellent point. From there, the "Cut" tool could be used to reorganize the
> output to exactly match that of the 13-column regular megablast output. So,
> no external data needed, no tool modifications needed.
> This can't be done on the main public Galaxy instance as BLAST+ is not
> available there, but for any local/cloud instance this is an alternative
> certainly work testing.
> Best,
> Jen
> Galaxy team
> On 4/24/12 2:36 PM, Peter Cock wrote:
>> On Tue, Apr 24, 2012 at 10:24 PM, Jennifer Jackson<j...@bx.psu.edu>  wrote:
>>> ..., using
>>> the BLAST+ BLASTN megablast wrapper that Peter authored, in a local or
>>> cloud
>>> instance, would be the best immediate remedy (this version has the
>>> standard
>>> 12 column output). Sequence length data could always be obtained from
>>> Genbank and added into these results using other Galaxy tools (column
>>> join,
>>> etc.).
>> Getting the query and match sequence lengths is even simpler that
>> that with the BLAST+ wrappers - just select the "extended" tabular output.
>> Of course, you'll need to adjust the downstream analysis to take into
>> account the different column numbers.
>> Peter
> --
> Jennifer Jackson
> http://galaxyproject.org

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