I completely understand what you're saying Greg and I have no doubt that your 
billing only covers the maintainence costs of your cluster - and I don't want 
to derail your thread because you ask a very legitimate question (to which im 
afraid I dont know the answer to, and would also be interested to hear the 
outcome of!); but I was just curious to hear if anyone in the community knew 
what protection there is for the developers of software if anyone can charge, 
say, $1000 for an alignment using free tools that takes only an hour to run.

In retrospect I should never have brought this up within your thread, and 
should have asked the question in it's own right (perhaps in a mailing-list 
directed at developers rather than users).

Anyway, all the best with your question :-)

- John


On 23 Aug 2012, at 19:01, mailing list <margeem...@gmail.com> wrote:

> No, no it's just internal billing within our organization.  We're
> charging for compute time on the cluster, not for any particular
> software.  No one is making any money off of Galaxy, it's just a way
> to fairly divide up the compute time available to the organization.
> 
> -Greg
> 
> On Thu, Aug 23, 2012 at 11:27 AM, John Jones <mr.johnjo...@gmail.com> wrote:
>> Is it acceptable/legal to bill people for using the opensource tools in 
>> Galaxy?
>> 
>> I can understand billing for server/cluster usage, perhaps even for a 
>> profit, but when I write a tool in my own time for free and then specify 
>> that people who distribute my tool may only do so non-commercially, it would 
>> make me very sad to think that people are getting around this buy charging 
>> excessive amounts in "sever-usage-fees", and thus making a business out of 
>> my free work.
>> 
>> I'm not saying that this is what you are doing Greg, and I'm sure you have 
>> your reasons, but I'm really just wondering what sort of copyright 
>> protection i would need as a bioinformatics software developer to prevent 
>> such abuse of charity.
>> 
>> All the best,
>> 
>> - John
>> 
>> On 22 Aug 2012, at 21:20, mailing list <margeem...@gmail.com> wrote:
>> 
>>> Hi guys,
>>> 
>>> I want to install Galaxy on a local server and hook it into our SGE cluster.
>>> 
>>> This excellent document seems to provide a lot of the steps
>>> http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster
>>> 
>>> however I have two questions I'm not sure about.
>>> 
>>> 1. Right now users keep their data in their home directories.  The
>>> jobs they run on the cluster have access to the user's home directory
>>> and use that data.  How would this work with Galaxy?  Can the Galaxy
>>> interface and jobs reference data in the users' home directories?  Or
>>> I guess how does this work?
>>> 
>>> 
>>> 2. Also can I integrate the Galaxy user system with LDAP?  And can
>>> that user information be passed to the cluster to run the jobs under
>>> that user?  We need this for cluster billing purposes.
>>> 
>>> 
>>> Thanks in advance for any help.  Everyone is our company is really
>>> pining for a Galaxy install and I'm really hoping I can set it up for
>>> them.
>>> 
>>> -Greg
>>> ___________________________________________________________
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>>> 
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