Hi Ross,
I think I need to clarify. I have a file in
/home/galaxy/data-test/dir1/dir2/somefile.txt
Under the "Upload files from filesystem paths", In the "path to upload" window
I paste "/home/galaxy/data-test". This then puts the "somefile.txt" in the
/home/galaxy/galaxy-dist/database/files/000 directory. However, I elected to
keep the directory structure. I can see this if I navigate through the "shared
data" tab but where is this information stored under the galaxt-dist structure.
As my application needs to have the directory structure kept, so need to access
it from the xml/command line
I thought it might have been something like:
/home/galaxy/galaxy-dist/database/files/000/data-test/dir1/dir2/dataset_id.dat.
But this is not the case rather
/home/galaxy/galaxy-dist/database/files/000/dataset_id.dat. i.e. no directory
structure. So how can I access this information from the xml files in the tools
directory?
Thanks
Neil
________________________________________
From: Ross [[email protected]]
Sent: Wednesday, January 02, 2013 4:43 PM
To: Burdett, Neil (ICT Centre, Herston - RBWH)
Cc: galaxy-user
Subject: Re: [galaxy-user] Upload files from filesystem paths
Try importing those library files to the history where you want them - browse
the Galaxy 'shared data' tab to where you uploaded them.
On Wed, Jan 2, 2013 at 11:39 AM,
<[email protected]<mailto:[email protected]>> wrote:
Hi,
I have a local galaxy installation.
I've created a data library, selected "Upload files from filesystem paths",
pasted a path in the "path to upload" window, and I've selected to preserve the
directory structure". And the files get imported.
How do I now access these files from my application? I don't want to import
them into the history as then they lose the directory structure. I can't see
where they are physically under the galaxy-dist structure
Thanks for any help
Neil
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