Updates to InOrder Model; MIPS *was* slightly broken after import
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-Of note is that I needed to an ID to the timebuffer class so that generic 
pipeline stages could figure out what timebuffer they were accessing.
-Updated defaults in InOrder as newer changes forced param values to have a 
default value. "Valgrind"'ed code to make sure things were initialized 
correctly before accessed
- More consistent interface for accessing inter-stage buffers
- cleaned up comments and unused functions.
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