It looks like one of my messages didn't make it to the list but that one did: http://article.gmane.org/gmane.linux.gentoo.science/2148
My final opinion on the matter looking at your site.cfg is that you don't have a blas eselected at all and that's not a valid configuration. eselect blas list will tell you all the implementation of blas available choose the one that match your current lapack one. Francois On Sun, 15 Jun 2014 23:20:30 Bastian Löffler wrote: > I did. I posted site.cfg an regarding numpy: Installing this was some > time ago. Its an scipy update making trouble. > > Regards Bastian > > Am 15.06.2014 23:13, schrieb François Bissey: > > You obviously didn't read my last two emails. > > > > Francois > > > > On Sun, 15 Jun 2014 16:22:43 Bastian Löffler wrote: > >> I still have this problem when updating to scipy-0.14.0. Ideas? > >> > >> Am 09.06.2014 20:41, schrieb Bastian Löffler: > >>> Hi, > >>> > >>> this is > >>> > >>> /var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7/site. > >>> cf > >>> g: > >>> > >>> [blas] > >>> include_dirs = > >>> library_dirs = :/usr/lib64 > >>> blas_libs = > >>> [lapack] > >>> library_dirs = //opt/acml5.3.1/gfortran64/lib:/usr/lib64 > >>> lapack_libs = acml > >>> > >>> Buliding numpy is ago. This is any scipy update. > >>> > >>> Am 09.06.2014 13:51, schrieb François Bissey: > >>>> numpy not bumpy. Sorry for the noise. > >>>> > >>>> On 9/06/2014, at 23:42, François Bissey <[email protected]> wrote: > >>>>> Hi, > >>>>> > >>>>> Could you post the file: > >>>>> /var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7/sit > >>>>> e. > >>>>> cfg > >>>>> for our perusal? You obviously managed to merge bumpy which > >>>>> fundamentally > >>>>> should have the exact same problem. > >>>>> Was it just before scipy or a while ago? > >>>>> > >>>>> François > >>>>> > >>>>> On 9/06/2014, at 23:25, Bastian Löffler <[email protected]> > > > > wrote: > >>>>>> Hi all, > >>>>>> > >>>>>> I can not build scipy 0.14.0 agaonst the currenct aclm since it > >>>>>> complains a missing blas: > >>>>>> > >>>>>> numpy.distutils.system_info.BlasNotFoundError: > >>>>>> Blas ( > >>>>>> > >>>>>> http://www.netlib.org/blas/ > >>>>>> ) libraries not found. > >>>>>> > >>>>>> Directories to search for the libraries can be specified in the > >>>>>> numpy/distutils/site.cfg file (section [blas]) or by setting > >>>>>> the BLAS environment variable. > >>>>>> > >>>>>> * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase): > >>>>>> * (no error message) > >>>>>> * > >>>>>> * Call stack: > >>>>>> * ebuild.sh, line 93: Called src_compile > >>>>>> * environment, line 4075: Called distutils-r1_src_compile > >>>>>> * environment, line 1421: Called _distutils-r1_run_foreach_impl > >>>>>> 'python_compile' > >>>>>> * environment, line 312: Called python_parallel_foreach_impl > >>>>>> 'distutils-r1_run_phase' 'python_compile' > >>>>>> * environment, line 3808: Called > >>>>>> multibuild_parallel_foreach_variant > >>>>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' > >>>>>> 'python_compile' > >>>>>> * environment, line 2855: Called multibuild_foreach_variant > >>>>>> '_multibuild_parallel' '_python_multibuild_wrapper' > >>>>>> 'distutils-r1_run_phase' 'python_compile' > >>>>>> * environment, line 2798: Called _multibuild_run > >>>>>> '_multibuild_parallel' '_python_multibuild_wrapper' > >>>>>> 'distutils-r1_run_phase' 'python_compile' > >>>>>> * environment, line 2796: Called _multibuild_parallel > >>>>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' > >>>>>> 'python_compile' > >>>>>> * environment, line 2846: Called _python_multibuild_wrapper > >>>>>> 'distutils-r1_run_phase' 'python_compile' > >>>>>> * environment, line 914: Called distutils-r1_run_phase > >>>>>> 'python_compile' > >>>>>> * environment, line 1412: Called python_compile > >>>>>> * environment, line 3315: Called distutils-r1_python_compile > >>>>>> 'config_fc' '--noopt' '--noarch' > >>>>>> * environment, line 1292: Called esetup.py 'build' 'config_fc' > >>>>>> '--noopt' '--noarch' > >>>>>> * environment, line 1862: Called die > >>>>>> * The specific snippet of code: > >>>>>> * "${@}" || die > >>>>>> * > >>>>>> * If you need support, post the output of `emerge --info > >>>>>> '=sci-libs/scipy-0.14.0::gentoo'`, > >>>>>> * the complete build log and the output of `emerge -pqv > >>>>>> '=sci-libs/scipy-0.14.0::gentoo'`. > >>>>>> * The complete build log is located at > >>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'. > >>>>>> * The ebuild environment file is located at > >>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'. > >>>>>> * Working directory: > >>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7' > >>>>>> * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0' > >>>>>> /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) > >>>>>> - > >>>>>> No such process > >>>>>> blas_opt_info: > >>>>>> > >>>>>> system_info: > >>>>>> NOT AVAILABLE > >>>>>> > >>>>>> blas_info: > >>>>>> libraries not found in ['/usr/lib64'] > >>>>>> NOT AVAILABLE > >>>>>> > >>>>>> blas_src_info: > >>>>>> NOT AVAILABLE > >>>>>> > >>>>>> /usr/lib64/python3.3/distutils/dist.py:258: UserWarning: Unknown > >>>>>> distribution option: 'test_suite' > >>>>>> > >>>>>> warnings.warn(msg) > >>>>>> > >>>>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:151 > >>>>>> 1: > >>>>>> > >>>>>> UserWarning: > >>>>>> Atlas ( > >>>>>> > >>>>>> http://math-atlas.sourceforge.net/ > >>>>>> ) libraries not found. > >>>>>> > >>>>>> Directories to search for the libraries can be specified in the > >>>>>> numpy/distutils/site.cfg file (section [atlas]) or by setting > >>>>>> the ATLAS environment variable. > >>>>>> > >>>>>> warnings.warn(AtlasNotFoundError.__doc__) > >>>>>> > >>>>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:566 > >>>>>> : > >>>>>> UserWarning: Specified path is invalid. > >>>>>> > >>>>>> warnings.warn('Specified path %s is invalid.' % d) > >>>>>> > >>>>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:152 > >>>>>> 0: > >>>>>> > >>>>>> UserWarning: > >>>>>> Blas ( > >>>>>> > >>>>>> http://www.netlib.org/blas/ > >>>>>> ) libraries not found. > >>>>>> > >>>>>> Directories to search for the libraries can be specified in the > >>>>>> numpy/distutils/site.cfg file (section [blas]) or by setting > >>>>>> the BLAS environment variable. > >>>>>> > >>>>>> warnings.warn(BlasNotFoundError.__doc__) > >>>>>> > >>>>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:152 > >>>>>> 3: > >>>>>> > >>>>>> UserWarning: > >>>>>> Blas ( > >>>>>> > >>>>>> http://www.netlib.org/blas/ > >>>>>> ) sources not found. > >>>>>> > >>>>>> Directories to search for the sources can be specified in the > >>>>>> numpy/distutils/site.cfg file (section [blas_src]) or by setting > >>>>>> the BLAS_SRC environment variable. > >>>>>> > >>>>>> warnings.warn(BlasSrcNotFoundError.__doc__) > >>>>>> > >>>>>> Traceback (most recent call last): > >>>>>> File "setup.py", line 237, in <module> > >>>>>> > >>>>>> setup_package() > >>>>>> > >>>>>> File "setup.py", line 234, in setup_package > >>>>>> > >>>>>> setup(**metadata) > >>>>>> > >>>>>> File "/usr/lib64/python3.3/site-packages/numpy/distutils/core.py", > >>>>>> > >>>>>> line 135, in setup > >>>>>> > >>>>>> config = configuration() > >>>>>> > >>>>>> File "setup.py", line 173, in configuration > >>>>>> > >>>>>> config.add_subpackage('scipy') > >>>>>> > >>>>>> File > >>>>>> > >>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", > >>>>>> line > >>>>>> 966, in add_subpackage > >>>>>> > >>>>>> caller_level = 2) > >>>>>> > >>>>>> File > >>>>>> > >>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", > >>>>>> line > >>>>>> 935, in get_subpackage > >>>>>> > >>>>>> caller_level = caller_level + 1) > >>>>>> > >>>>>> File > >>>>>> > >>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", > >>>>>> line > >>>>>> 872, in _get_configuration_from_setup_py > >>>>>> > >>>>>> config = setup_module.configuration(*args) > >>>>>> > >>>>>> File "scipy/setup.py", line 12, in configuration > >>>>>> > >>>>>> config.add_subpackage('integrate') > >>>>>> > >>>>>> File > >>>>>> > >>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", > >>>>>> line > >>>>>> 966, in add_subpackage > >>>>>> > >>>>>> caller_level = 2) > >>>>>> > >>>>>> File > >>>>>> > >>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", > >>>>>> line > >>>>>> 935, in get_subpackage > >>>>>> > >>>>>> caller_level = caller_level + 1) > >>>>>> > >>>>>> File > >>>>>> > >>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", > >>>>>> line > >>>>>> 872, in _get_configuration_from_setup_py > >>>>>> > >>>>>> config = setup_module.configuration(*args) > >>>>>> > >>>>>> File "scipy/integrate/setup.py", line 12, in configuration > >>>>>> > >>>>>> blas_opt = get_info('blas_opt',notfound_action=2) > >>>>>> > >>>>>> File > >>>>>> > >>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py", > >>>>>> line 340, in get_info > >>>>>> > >>>>>> return cl().get_info(notfound_action) > >>>>>> > >>>>>> File > >>>>>> > >>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py", > >>>>>> line 499, in get_info > >>>>>> > >>>>>> raise self.notfounderror(self.notfounderror.__doc__) > >>>>>> > >>>>>> numpy.distutils.system_info.BlasNotFoundError: > >>>>>> Blas ( > >>>>>> > >>>>>> http://www.netlib.org/blas/ > >>>>>> ) libraries not found. > >>>>>> > >>>>>> Directories to search for the libraries can be specified in the > >>>>>> numpy/distutils/site.cfg file (section [blas]) or by setting > >>>>>> the BLAS environment variable. > >>>>>> > >>>>>> * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase): > >>>>>> * (no error message) > >>>>>> * > >>>>>> * Call stack: > >>>>>> * ebuild.sh, line 93: Called src_compile > >>>>>> * environment, line 4075: Called distutils-r1_src_compile > >>>>>> * environment, line 1421: Called _distutils-r1_run_foreach_impl > >>>>>> 'python_compile' > >>>>>> * environment, line 312: Called python_parallel_foreach_impl > >>>>>> 'distutils-r1_run_phase' 'python_compile' > >>>>>> * environment, line 3808: Called > >>>>>> multibuild_parallel_foreach_variant > >>>>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' > >>>>>> 'python_compile' > >>>>>> * environment, line 2855: Called multibuild_foreach_variant > >>>>>> '_multibuild_parallel' '_python_multibuild_wrapper' > >>>>>> 'distutils-r1_run_phase' 'python_compile' > >>>>>> * environment, line 2798: Called _multibuild_run > >>>>>> '_multibuild_parallel' '_python_multibuild_wrapper' > >>>>>> 'distutils-r1_run_phase' 'python_compile' > >>>>>> * environment, line 2796: Called _multibuild_parallel > >>>>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' > >>>>>> 'python_compile' > >>>>>> * environment, line 2846: Called _python_multibuild_wrapper > >>>>>> 'distutils-r1_run_phase' 'python_compile' > >>>>>> * environment, line 914: Called distutils-r1_run_phase > >>>>>> 'python_compile' > >>>>>> * environment, line 1412: Called python_compile > >>>>>> * environment, line 3315: Called distutils-r1_python_compile > >>>>>> 'config_fc' '--noopt' '--noarch' > >>>>>> * environment, line 1292: Called esetup.py 'build' 'config_fc' > >>>>>> '--noopt' '--noarch' > >>>>>> * environment, line 1862: Called die > >>>>>> * The specific snippet of code: > >>>>>> * "${@}" || die > >>>>>> * > >>>>>> * If you need support, post the output of `emerge --info > >>>>>> '=sci-libs/scipy-0.14.0::gentoo'`, > >>>>>> * the complete build log and the output of `emerge -pqv > >>>>>> '=sci-libs/scipy-0.14.0::gentoo'`. > >>>>>> * The complete build log is located at > >>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'. > >>>>>> * The ebuild environment file is located at > >>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'. > >>>>>> * Working directory: > >>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python3_3' > >>>>>> * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0' > >>>>>> /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) > >>>>>> - > >>>>>> No such process > >>>>>> > >>>>>>>>> Failed to emerge sci-libs/scipy-0.14.0, Log file:
