Well of course i checked that: eselect blas list Available providers for blas: [1] acml-gfortran64 * [2] acml-gfortran64-openmp [3] eigen [4] reference
SO my blas is acml-gfortran64. Am 15.06.2014 23:27, schrieb François Bissey: > It looks like one of my messages didn't make it to the list but that one did: > http://article.gmane.org/gmane.linux.gentoo.science/2148 > > My final opinion on the matter looking at your site.cfg is that you don't have > a blas eselected at all and that's not a valid configuration. > eselect blas list > will tell you all the implementation of blas available choose the one > that match your current lapack one. > > Francois > > On Sun, 15 Jun 2014 23:20:30 Bastian Löffler wrote: >> I did. I posted site.cfg an regarding numpy: Installing this was some >> time ago. Its an scipy update making trouble. >> >> Regards Bastian >> >> Am 15.06.2014 23:13, schrieb François Bissey: >>> You obviously didn't read my last two emails. >>> >>> Francois >>> >>> On Sun, 15 Jun 2014 16:22:43 Bastian Löffler wrote: >>>> I still have this problem when updating to scipy-0.14.0. Ideas? >>>> >>>> Am 09.06.2014 20:41, schrieb Bastian Löffler: >>>>> Hi, >>>>> >>>>> this is >>>>> >>>>> /var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7/site. >>>>> cf >>>>> g: >>>>> >>>>> [blas] >>>>> include_dirs = >>>>> library_dirs = :/usr/lib64 >>>>> blas_libs = >>>>> [lapack] >>>>> library_dirs = //opt/acml5.3.1/gfortran64/lib:/usr/lib64 >>>>> lapack_libs = acml >>>>> >>>>> Buliding numpy is ago. This is any scipy update. >>>>> >>>>> Am 09.06.2014 13:51, schrieb François Bissey: >>>>>> numpy not bumpy. Sorry for the noise. >>>>>> >>>>>> On 9/06/2014, at 23:42, François Bissey <[email protected]> wrote: >>>>>>> Hi, >>>>>>> >>>>>>> Could you post the file: >>>>>>> /var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7/sit >>>>>>> e. >>>>>>> cfg >>>>>>> for our perusal? You obviously managed to merge bumpy which >>>>>>> fundamentally >>>>>>> should have the exact same problem. >>>>>>> Was it just before scipy or a while ago? >>>>>>> >>>>>>> François >>>>>>> >>>>>>> On 9/06/2014, at 23:25, Bastian Löffler <[email protected]> >>> wrote: >>>>>>>> Hi all, >>>>>>>> >>>>>>>> I can not build scipy 0.14.0 agaonst the currenct aclm since it >>>>>>>> complains a missing blas: >>>>>>>> >>>>>>>> numpy.distutils.system_info.BlasNotFoundError: >>>>>>>> Blas ( >>>>>>>> >>>>>>>> http://www.netlib.org/blas/ >>>>>>>> ) libraries not found. >>>>>>>> >>>>>>>> Directories to search for the libraries can be specified in the >>>>>>>> numpy/distutils/site.cfg file (section [blas]) or by setting >>>>>>>> the BLAS environment variable. >>>>>>>> >>>>>>>> * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase): >>>>>>>> * (no error message) >>>>>>>> * >>>>>>>> * Call stack: >>>>>>>> * ebuild.sh, line 93: Called src_compile >>>>>>>> * environment, line 4075: Called distutils-r1_src_compile >>>>>>>> * environment, line 1421: Called _distutils-r1_run_foreach_impl >>>>>>>> 'python_compile' >>>>>>>> * environment, line 312: Called python_parallel_foreach_impl >>>>>>>> 'distutils-r1_run_phase' 'python_compile' >>>>>>>> * environment, line 3808: Called >>>>>>>> multibuild_parallel_foreach_variant >>>>>>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' >>>>>>>> 'python_compile' >>>>>>>> * environment, line 2855: Called multibuild_foreach_variant >>>>>>>> '_multibuild_parallel' '_python_multibuild_wrapper' >>>>>>>> 'distutils-r1_run_phase' 'python_compile' >>>>>>>> * environment, line 2798: Called _multibuild_run >>>>>>>> '_multibuild_parallel' '_python_multibuild_wrapper' >>>>>>>> 'distutils-r1_run_phase' 'python_compile' >>>>>>>> * environment, line 2796: Called _multibuild_parallel >>>>>>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' >>>>>>>> 'python_compile' >>>>>>>> * environment, line 2846: Called _python_multibuild_wrapper >>>>>>>> 'distutils-r1_run_phase' 'python_compile' >>>>>>>> * environment, line 914: Called distutils-r1_run_phase >>>>>>>> 'python_compile' >>>>>>>> * environment, line 1412: Called python_compile >>>>>>>> * environment, line 3315: Called distutils-r1_python_compile >>>>>>>> 'config_fc' '--noopt' '--noarch' >>>>>>>> * environment, line 1292: Called esetup.py 'build' 'config_fc' >>>>>>>> '--noopt' '--noarch' >>>>>>>> * environment, line 1862: Called die >>>>>>>> * The specific snippet of code: >>>>>>>> * "${@}" || die >>>>>>>> * >>>>>>>> * If you need support, post the output of `emerge --info >>>>>>>> '=sci-libs/scipy-0.14.0::gentoo'`, >>>>>>>> * the complete build log and the output of `emerge -pqv >>>>>>>> '=sci-libs/scipy-0.14.0::gentoo'`. >>>>>>>> * The complete build log is located at >>>>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'. >>>>>>>> * The ebuild environment file is located at >>>>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'. >>>>>>>> * Working directory: >>>>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7' >>>>>>>> * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0' >>>>>>>> /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) >>>>>>>> - >>>>>>>> No such process >>>>>>>> blas_opt_info: >>>>>>>> >>>>>>>> system_info: >>>>>>>> NOT AVAILABLE >>>>>>>> >>>>>>>> blas_info: >>>>>>>> libraries not found in ['/usr/lib64'] >>>>>>>> NOT AVAILABLE >>>>>>>> >>>>>>>> blas_src_info: >>>>>>>> NOT AVAILABLE >>>>>>>> >>>>>>>> /usr/lib64/python3.3/distutils/dist.py:258: UserWarning: Unknown >>>>>>>> distribution option: 'test_suite' >>>>>>>> >>>>>>>> warnings.warn(msg) >>>>>>>> >>>>>>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:151 >>>>>>>> 1: >>>>>>>> >>>>>>>> UserWarning: >>>>>>>> Atlas ( >>>>>>>> >>>>>>>> http://math-atlas.sourceforge.net/ >>>>>>>> ) libraries not found. >>>>>>>> >>>>>>>> Directories to search for the libraries can be specified in the >>>>>>>> numpy/distutils/site.cfg file (section [atlas]) or by setting >>>>>>>> the ATLAS environment variable. >>>>>>>> >>>>>>>> warnings.warn(AtlasNotFoundError.__doc__) >>>>>>>> >>>>>>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:566 >>>>>>>> : >>>>>>>> UserWarning: Specified path is invalid. >>>>>>>> >>>>>>>> warnings.warn('Specified path %s is invalid.' % d) >>>>>>>> >>>>>>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:152 >>>>>>>> 0: >>>>>>>> >>>>>>>> UserWarning: >>>>>>>> Blas ( >>>>>>>> >>>>>>>> http://www.netlib.org/blas/ >>>>>>>> ) libraries not found. >>>>>>>> >>>>>>>> Directories to search for the libraries can be specified in the >>>>>>>> numpy/distutils/site.cfg file (section [blas]) or by setting >>>>>>>> the BLAS environment variable. >>>>>>>> >>>>>>>> warnings.warn(BlasNotFoundError.__doc__) >>>>>>>> >>>>>>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:152 >>>>>>>> 3: >>>>>>>> >>>>>>>> UserWarning: >>>>>>>> Blas ( >>>>>>>> >>>>>>>> http://www.netlib.org/blas/ >>>>>>>> ) sources not found. >>>>>>>> >>>>>>>> Directories to search for the sources can be specified in the >>>>>>>> numpy/distutils/site.cfg file (section [blas_src]) or by setting >>>>>>>> the BLAS_SRC environment variable. >>>>>>>> >>>>>>>> warnings.warn(BlasSrcNotFoundError.__doc__) >>>>>>>> >>>>>>>> Traceback (most recent call last): >>>>>>>> File "setup.py", line 237, in <module> >>>>>>>> >>>>>>>> setup_package() >>>>>>>> >>>>>>>> File "setup.py", line 234, in setup_package >>>>>>>> >>>>>>>> setup(**metadata) >>>>>>>> >>>>>>>> File "/usr/lib64/python3.3/site-packages/numpy/distutils/core.py", >>>>>>>> >>>>>>>> line 135, in setup >>>>>>>> >>>>>>>> config = configuration() >>>>>>>> >>>>>>>> File "setup.py", line 173, in configuration >>>>>>>> >>>>>>>> config.add_subpackage('scipy') >>>>>>>> >>>>>>>> File >>>>>>>> >>>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", >>>>>>>> line >>>>>>>> 966, in add_subpackage >>>>>>>> >>>>>>>> caller_level = 2) >>>>>>>> >>>>>>>> File >>>>>>>> >>>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", >>>>>>>> line >>>>>>>> 935, in get_subpackage >>>>>>>> >>>>>>>> caller_level = caller_level + 1) >>>>>>>> >>>>>>>> File >>>>>>>> >>>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", >>>>>>>> line >>>>>>>> 872, in _get_configuration_from_setup_py >>>>>>>> >>>>>>>> config = setup_module.configuration(*args) >>>>>>>> >>>>>>>> File "scipy/setup.py", line 12, in configuration >>>>>>>> >>>>>>>> config.add_subpackage('integrate') >>>>>>>> >>>>>>>> File >>>>>>>> >>>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", >>>>>>>> line >>>>>>>> 966, in add_subpackage >>>>>>>> >>>>>>>> caller_level = 2) >>>>>>>> >>>>>>>> File >>>>>>>> >>>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", >>>>>>>> line >>>>>>>> 935, in get_subpackage >>>>>>>> >>>>>>>> caller_level = caller_level + 1) >>>>>>>> >>>>>>>> File >>>>>>>> >>>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", >>>>>>>> line >>>>>>>> 872, in _get_configuration_from_setup_py >>>>>>>> >>>>>>>> config = setup_module.configuration(*args) >>>>>>>> >>>>>>>> File "scipy/integrate/setup.py", line 12, in configuration >>>>>>>> >>>>>>>> blas_opt = get_info('blas_opt',notfound_action=2) >>>>>>>> >>>>>>>> File >>>>>>>> >>>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py", >>>>>>>> line 340, in get_info >>>>>>>> >>>>>>>> return cl().get_info(notfound_action) >>>>>>>> >>>>>>>> File >>>>>>>> >>>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py", >>>>>>>> line 499, in get_info >>>>>>>> >>>>>>>> raise self.notfounderror(self.notfounderror.__doc__) >>>>>>>> >>>>>>>> numpy.distutils.system_info.BlasNotFoundError: >>>>>>>> Blas ( >>>>>>>> >>>>>>>> http://www.netlib.org/blas/ >>>>>>>> ) libraries not found. >>>>>>>> >>>>>>>> Directories to search for the libraries can be specified in the >>>>>>>> numpy/distutils/site.cfg file (section [blas]) or by setting >>>>>>>> the BLAS environment variable. >>>>>>>> >>>>>>>> * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase): >>>>>>>> * (no error message) >>>>>>>> * >>>>>>>> * Call stack: >>>>>>>> * ebuild.sh, line 93: Called src_compile >>>>>>>> * environment, line 4075: Called distutils-r1_src_compile >>>>>>>> * environment, line 1421: Called _distutils-r1_run_foreach_impl >>>>>>>> 'python_compile' >>>>>>>> * environment, line 312: Called python_parallel_foreach_impl >>>>>>>> 'distutils-r1_run_phase' 'python_compile' >>>>>>>> * environment, line 3808: Called >>>>>>>> multibuild_parallel_foreach_variant >>>>>>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' >>>>>>>> 'python_compile' >>>>>>>> * environment, line 2855: Called multibuild_foreach_variant >>>>>>>> '_multibuild_parallel' '_python_multibuild_wrapper' >>>>>>>> 'distutils-r1_run_phase' 'python_compile' >>>>>>>> * environment, line 2798: Called _multibuild_run >>>>>>>> '_multibuild_parallel' '_python_multibuild_wrapper' >>>>>>>> 'distutils-r1_run_phase' 'python_compile' >>>>>>>> * environment, line 2796: Called _multibuild_parallel >>>>>>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' >>>>>>>> 'python_compile' >>>>>>>> * environment, line 2846: Called _python_multibuild_wrapper >>>>>>>> 'distutils-r1_run_phase' 'python_compile' >>>>>>>> * environment, line 914: Called distutils-r1_run_phase >>>>>>>> 'python_compile' >>>>>>>> * environment, line 1412: Called python_compile >>>>>>>> * environment, line 3315: Called distutils-r1_python_compile >>>>>>>> 'config_fc' '--noopt' '--noarch' >>>>>>>> * environment, line 1292: Called esetup.py 'build' 'config_fc' >>>>>>>> '--noopt' '--noarch' >>>>>>>> * environment, line 1862: Called die >>>>>>>> * The specific snippet of code: >>>>>>>> * "${@}" || die >>>>>>>> * >>>>>>>> * If you need support, post the output of `emerge --info >>>>>>>> '=sci-libs/scipy-0.14.0::gentoo'`, >>>>>>>> * the complete build log and the output of `emerge -pqv >>>>>>>> '=sci-libs/scipy-0.14.0::gentoo'`. >>>>>>>> * The complete build log is located at >>>>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'. >>>>>>>> * The ebuild environment file is located at >>>>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'. >>>>>>>> * Working directory: >>>>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python3_3' >>>>>>>> * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0' >>>>>>>> /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) >>>>>>>> - >>>>>>>> No such process >>>>>>>> >>>>>>>>>>> Failed to emerge sci-libs/scipy-0.14.0, Log file: > >
