#191: represent PCORI CDM 2.x terminology as i2b2 metadata
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Reporter: dconnolly | Owner: dconnolly
Type: design-issue | Status: new
Priority: major | Milestone: data-domains3
Component: data-stds | Resolution:
Keywords: | Blocked By: 109
Blocking: |
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Changes (by dconnolly):
* priority: minor => major
* milestone: bariatric-study-data => data-domains3
Comment:
Replying to [ticket:279#comment:11 nateapathy]:
> Does the SCILHS CDRN CDM ontology and CDM transformation code
effectively replace the comparable subject areas that are on the GPC_TERMS
table?
Since we have been pretty well aligned with SCILHS on goals and high level
design, I expect the changes to be fairly small, but yes, this may involve
updates to our design for demographics (#67), vitals (#23), and diagnoses
(#63) and perhaps enrollment (#229). It should address our outstanding
issues on procedures (#243).
As SCILHS addresses CDM v2 and v3, it may impact our design for meds (#78)
and address labs (#158).
> We are starting this effort and don't want to pursue the GPC_TERMS work
if we will be adopting the
[https://community.i2b2.org/wiki/display/SCILHS/SCILHS+i2b2+PCORnet+Common+Data+Model+Ontology+Home
ontologies from SCILHS] instead.
Feel free to skip to the SCILHS ontology and let us know how it goes, but
please don't let this stall your work. As I say, I expect the changes are
small, and if you start work with the current `GPC_TERMS`, migrating
should be a manageable effort.
The major benefit to offset the cost of this disruption is filling in gaps
in our CDM ETL (ticket:240#comment:6), as well as shared development costs
with SCILHS going forward.
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/191#comment:3>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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