#297: collect breast cancer data from GPC sites for linking with surveys, multi-
signal analysis
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Reporter: dconnolly | Owner: gkowalski
Type: task | Status: assigned
Priority: major | Milestone: cohort-char-bc-db
Component: data- | Resolution:
sharing | Blocked By: 329, 330, 358, 382, 452, 467, 468,
Keywords: | 470, 480, 482, 513
Blocking: 214, 298 |
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Comment (by tmeyer):
Replying to [comment:34 dconnolly]:
> The others (1310, 1647, 1648, 1330) look like pretty normal elements
with single digit codes (though I don't have labels for the codes). If
your i2b2 puts the code in nval_num or tval_char, it doesn't follow the
[[NAACCR_ETL]] design that we have been working toward since Sep 2015
(#358).
>
> It's fine to "vote early; vote often." That is: if you can use `bc-emr-
registry.py` to make CSV files with all your data except a few elements,
please submit it and then let's work out the rest separately.
We're not using NVAL_NUM or TVAL_CHAR. I can associated the concept_cds
with the ontology to get them to output. I just wanted to make sure I was
consistent with everyone else.
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/297#comment:35>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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