Thanks Matt. Szabolcs, I was looking at data I had run through the pre-processing pipeline myself. Many of the intermediate files are not distributed via ConnectomeDB.
> On Feb 22, 2017, at 8:08 AM, Glasser, Matthew <[email protected]> wrote: > > We don’t distribute the diffusion space data. > > Peace, > > Matt. > > From: <[email protected]> on behalf of Szabolcs David > <[email protected]> > Date: Wednesday, February 22, 2017 at 6:46 AM > To: Philip A Cook <[email protected]> > Cc: "[email protected]" <[email protected]> > Subject: Re: [HCP-Users] dMRI after eddy but before acpc-T1W > > Hi Philip, > > Thank you for your email. Well I am in trouble, since in the Diffusion folder > I can only see: > > bvals > bvecs > data.nii.gz > grad_dev.nii.gz > nodif_brain_mask.nii.gz > > I looked up the reference manuals (eg.: > https://www.humanconnectome.org/documentation/data-release/Q1_Release_Appendix_III.pdf > p.48) > And it tells me the same. Am I missing something? > > Cheers, > Szabolcs > > > > > On Mon, Feb 20, 2017 at 8:31 PM, Philip A Cook <[email protected]> > wrote: >> Hi, >> >> I believe the unwarped eddy output will be under >> >> Diffusion/eddy/eddy_unwarped_images.nii.gz >> >> https://github.com/Washington-University/Pipelines/blob/6e22e45a066df542660ad0cdb2e1cec6a373ecb4/DiffusionPreprocessing/scripts/run_eddy.sh#L523 >> >> >> >> > On Feb 2, 2017, at 10:08 AM, Szabolcs David <[email protected]> >> > wrote: >> > >> > Hi All, >> > >> > I would like to look at the eddy corrected diffusion images+bvecs, but >> > before the realignment to the T1w. Is it possible somehow? >> > Or maybe just the trafo file of b0 to T1w registration available somewhere? >> > >> > Cheers, >> > Szabolcs >> > _______________________________________________ >> > HCP-Users mailing list >> > [email protected] >> > http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> > >> > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
