All intermediate files are available via REST calls directly into the database. https://wiki.humanconnectome.org/display/PublicData/How+To+Access+Subject+D ata+via+REST
cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave.Tel: 314-747-6173 St. Louis, MO 63110Email: [email protected] On 2/22/17, 9:08 AM, "[email protected] on behalf of Philip A Cook" <[email protected] on behalf of [email protected]> wrote: Thanks Matt. Szabolcs, I was looking at data I had run through the pre-processing pipeline myself. Many of the intermediate files are not distributed via ConnectomeDB. > On Feb 22, 2017, at 8:08 AM, Glasser, Matthew <[email protected]> wrote: > > We don’t distribute the diffusion space data. > > Peace, > > Matt. > > From: <[email protected]> on behalf of Szabolcs >David <[email protected]> > Date: Wednesday, February 22, 2017 at 6:46 AM > To: Philip A Cook <[email protected]> > Cc: "[email protected]" <[email protected]> > Subject: Re: [HCP-Users] dMRI after eddy but before acpc-T1W > > Hi Philip, > > Thank you for your email. Well I am in trouble, since in the Diffusion >folder I can only see: > > bvals > bvecs > data.nii.gz > grad_dev.nii.gz > nodif_brain_mask.nii.gz > > I looked up the reference manuals (eg.: >https://www.humanconnectome.org/documentation/data-release/Q1_Release_Appe >ndix_III.pdf p.48) > And it tells me the same. Am I missing something? > > Cheers, > Szabolcs > > > > > On Mon, Feb 20, 2017 at 8:31 PM, Philip A Cook ><[email protected]> wrote: >> Hi, >> >> I believe the unwarped eddy output will be under >> >> Diffusion/eddy/eddy_unwarped_images.nii.gz >> >> >>https://github.com/Washington-University/Pipelines/blob/6e22e45a066df5426 >>60ad0cdb2e1cec6a373ecb4/DiffusionPreprocessing/scripts/run_eddy.sh#L523 >> >> >> >> > On Feb 2, 2017, at 10:08 AM, Szabolcs David >><[email protected]> wrote: >> > >> > Hi All, >> > >> > I would like to look at the eddy corrected diffusion images+bvecs, >>but before the realignment to the T1w. Is it possible somehow? >> > Or maybe just the trafo file of b0 to T1w registration available >>somewhere? >> > >> > Cheers, >> > Szabolcs >> > _______________________________________________ >> > HCP-Users mailing list >> > [email protected] >> > http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> > >> > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > The materials in this message are private and may contain Protected >Healthcare Information or other information of a sensitive nature. If you >are not the intended recipient, be advised that any unauthorized use, >disclosure, copying or the taking of any action in reliance on the >contents of this information is strictly prohibited. If you have received >this email in error, please immediately notify the sender via telephone >or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
