The firmware upgrade process cannot cause any electrical damage, nor can it
cause the bootloader to go bad.
I would start by upgrading the IOIO firmware to the latest version and
convince yourself that it works OK by running it against HelloIOIOConsole
running on a PC.
If your VREG is indeed fried, your 5V bypass should solve the problem.
Please use a voltmeter to verify that you indeed have 5V on the 5V rail
with / without the Android connected.

On Tue, Aug 26, 2014 at 1:04 AM, <[email protected]> wrote:

> I powered the board directly using 5V and the red light is on. However
> when connected to Android phone (with red cable and usb debugging off) the
> HelloIOIO app cannot connect to the IOIO (which it did initially before
> firmware upgrade). When connected to PC, the IOIODude detects now
> application mode with V3 version.
> I tried the switch host/android mode with no difference, so what to do
> next ?
> Is it possible that when USB cable was connected to PC, this somehow
> damaged the VREG ? Because all this stuff started when trying to upgrade
> the firmware.
>
> perjantai, 22. elokuuta 2014 21.41.01 UTC+3 Ytai kirjoitti:
>>
>> On Thu, Aug 21, 2014 at 11:50 PM, <[email protected]> wrote:
>>
>>> Thank you for your response, I will try to replace the VREG. Does this
>>> mean that if I take TPS62130 away, I can power the board directly using 5V
>>> pin (with 5V power source) ?
>>>
>>
>> Yes. It is very likely that you can do that even without removing the
>> TPS62130. Just try and see whether you see any excessive current draw on
>> your source and/or something overheating on the IOIO in the VREG area.
>>
>>
>>> I think that firmware upgrade is ok, but I cannot verify it, because PC
>>> cannot communicate with V3 or V5 firmware, only with bootloader. I am using
>>> Windows 7, with necessary drivers.
>>>
>>
>> There were previously reports on problems related to the USBID pin, which
>> might explain this. I will look into this, and this is likely a simple
>> firmware fix, but this will probably not happen within the next two weeks
>> or so. In the meantime, if you feel comfortable enough messing with
>> hardware, you can locate where this signal is exposed on the board (hint:
>> one of the legs of the host mode switch has it) and force it to 3.3V. In
>> this condition, if the IOIO becomes visible to the PC in application mode,
>> then we verified that this is indeed the problem.
>>
>>
>>> Initially I tried to use Windows 8.1, but it does not recognize IOIO,
>>> not even in the bootloader mode,
>>>
>>>
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