Emily, you need to find your Java console and tell us what it says there. My guess is that the file was not found. Something is a little different, and the file you think is there is not there. Then the server sends a file-not-found page, and Jmol reports "no atoms loaded" because it isn't a recognizable format. I really doubt it's a Jmol 10/Jmol 11 issue.
You could just open a console from the Jmol popup menu and type load "xxxx" where xxxx is the file name you think is there. Bob Emily Heureux wrote: >The jmol looks like it is starting. I see the purple "Jmol" at the top, and >at the bottom of the browser, it says, "Applet jmolApplet0 started". It >stays that way, so there is an empty black box on the screen. If I >right-click to use the jmol menu, at the top it says "No atoms loaded", >which I believe is not correct. I think it is supposed to list the pdb file >then. So, maybe this is something you can't help me with, right? The >mystery is, when using 10.00, it works fine, and right-clicking will show >the pdbfile name instead of "No atoms loaded". > >I am using a web server (built into Catalyst). > >Question: If the jmolApplet line has a bad path, will it be reported, or >will it just be black, with no model? > >-----Original Message----- >From: [EMAIL PROTECTED] >[mailto:[EMAIL PROTECTED] On Behalf Of Angel >Herraez >Sent: Friday, December 21, 2007 2:23 AM >To: [email protected] >Subject: Re: [Jmol-developers] Switching from 10.00 to 11.2.14 > >Hi Emily > >I do not envisage any effect of Jmol version. >Can you say precisely what is not working? Do you see the applet? Any >errors in the Java console or Javascript errors? > >Are you testing the page from hard disk or from web server? > > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Microsoft >Defy all challenges. Microsoft(R) Visual Studio 2005. >http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ >_______________________________________________ >Jmol-developers mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-developers > > > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Microsoft >Defy all challenges. Microsoft(R) Visual Studio 2005. >http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ >_______________________________________________ >Jmol-developers mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-developers > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
