Hmmm. I click on Console and nothing happens. It is not showing an 'open/close' option, either, like I have seen before using 10.00.
Maybe it is best for me to start with how I installed? I followed the instructions on jmol.org. Since I am not using it as a stand-alone app on my computer, but instead wanting to use it as part of a webpage, I went with option 2, which says to only get the Jmol.js file, and all files that start with JmolApplet0 and end in .jar. I just added ALL the files into my jmol 11.2.14 directory, and retested, but it is still the same result. I will try redownloading and reinstalling now. Let me know if you see something I've messed up here. Thanks, Emily -----Original Message----- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Bob Hanson Sent: Friday, December 21, 2007 1:18 PM To: [email protected] Subject: Re: [Jmol-developers] Switching from 10.00 to 11.2.14 Emily, you need to find your Java console and tell us what it says there. My guess is that the file was not found. Something is a little different, and the file you think is there is not there. Then the server sends a file-not-found page, and Jmol reports "no atoms loaded" because it isn't a recognizable format. I really doubt it's a Jmol 10/Jmol 11 issue. You could just open a console from the Jmol popup menu and type load "xxxx" where xxxx is the file name you think is there. Bob Emily Heureux wrote: >The jmol looks like it is starting. I see the purple "Jmol" at the top, and >at the bottom of the browser, it says, "Applet jmolApplet0 started". It >stays that way, so there is an empty black box on the screen. If I >right-click to use the jmol menu, at the top it says "No atoms loaded", >which I believe is not correct. I think it is supposed to list the pdb file >then. So, maybe this is something you can't help me with, right? The >mystery is, when using 10.00, it works fine, and right-clicking will show >the pdbfile name instead of "No atoms loaded". > >I am using a web server (built into Catalyst). > >Question: If the jmolApplet line has a bad path, will it be reported, or >will it just be black, with no model? > >-----Original Message----- >From: [EMAIL PROTECTED] >[mailto:[EMAIL PROTECTED] On Behalf Of Angel >Herraez >Sent: Friday, December 21, 2007 2:23 AM >To: [email protected] >Subject: Re: [Jmol-developers] Switching from 10.00 to 11.2.14 > >Hi Emily > >I do not envisage any effect of Jmol version. >Can you say precisely what is not working? Do you see the applet? Any >errors in the Java console or Javascript errors? > >Are you testing the page from hard disk or from web server? > > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Microsoft >Defy all challenges. Microsoft(R) Visual Studio 2005. >http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ >_______________________________________________ >Jmol-developers mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-developers > > > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Microsoft >Defy all challenges. Microsoft(R) Visual Studio 2005. >http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ >_______________________________________________ >Jmol-developers mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-developers > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
