On Feb 2, 2006, at 9:58 a, Bob Hanson wrote:
Thanks, Miguel, especially for the ZIP option.
About connect/wireframe. Maybe I wasn't clear.
wireframe SINGLE, DOUBLE, AROMATIC, etc.
makes good sense. Just like wireframe ON/OFF, we aren't defining
bonds, just
tweaking how they are displayed (at least from a user perspective).
but you would be using wireframe to define the bond order in this
case; I don't think this is merely a display issue. so I agree with
the way it has been changed in v.48.
on the other hand, it would be nice to be able to tell the wireframe
command whether or not to display the bond order. perhaps an
addition to the set command (e.g., set bondorder on|off)?
regards,
tim
I was only suggesting
wireframe DELETE
should be
connect DELETE
because that, like other connect commands, can do permanent
"damage" to a model.
Now we have
connect SINGLE ....
and this makes no sense, or at least (even) I was fooled just now
and surprised that
it did not actually CONNECT the atoms specified.
I suppose the best solution is something like:
select carbon
CONNECT 1.2 (hydrogen) SINGLE
CONNECT 1.3 (all) DOUBLE
CONNECT 1.6 (all) SINGLE
and not use
CONNECT SINGLE
CONNECT DOUBLE
at all.
Would you like me to try my hand at this, now that I know how to
compile Jmol?
Bob
Miguel wrote:
Jmol prerelease 10.00.48 is now available for download from:
www.jmol.org/files
This version includes the following:
- Support for Catalan localization
(Thanks to Toni for the translation and Nico for integration)
- change of some commands from WIREFRAME -> CONNECT (see below)
- binary distribution .zip format as well as a .tar.gz
Catalan support
===============
Toni Hermoso Pulido provided a Catalan localization of Jmol for the
Catalan speakers centered around Barcelona in northeast Spain.
As usual, Nico did an excellent job of quickly integrating this in.
wireframe -> connect
====================
Commands for deleting bond connectivity and for changing bond
order have
been removed from WIREFRAME and are now available under CONNECT.
connect delete; # replaces wireframe delete
connect single|double|triple|aromatic|hbond; # replace wireframe
examples:
set bondmode and;
select <some-set-of-atoms>;
# NO LONGER SUPPORTED: wireframe delete;
connect delete;
select <some-other-set-of-atoms>;
# NO LONGER SUPPORTED: wireframe double;
connect double;
wireframe continues to be used for on/off and for selecting a bond
diameter for display.
.zip binary distribution
========================
This prerelease includes the distribution in .zip format for
Windows users.
The .tar.gz format is the recommended for all platforms, including
Windows, because the .tar file format correctly preserves file
permissions. This is important for OSX/Linux/Unix systems as well
as most
Windows XP systems (which use the NTFS file system).
In the future, if .zip files cause support issues because of file
permissions then the distribution of .zip files may be discontinued.
Miguel
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