OK. But first -- I would like someone using a Mac to confirm that they
observe this on the site as well.
On Jul 24, 2010, at 10:12 AM, Robert Hanson wrote:
> you need to report this to Bugzilla.
>
> On Sat, Jul 24, 2010 at 7:09 AM, Philip Bays <[email protected]> wrote:
> I think I have just diagnosed the problem, but not the solution.
>
> I have opened the java preferences and completely cleared the cache. (I know
> Angel, you said that in the first place.) Indeed, firefox loads both
> structures as expected and three items now appear in the java cache -- the
> applet and each of the molecule files.
>
> If I now close firefox, reopen it, and access the page, the error occurs. If
> I remove the chlorophyll file from the java cache, then restart firefox, it
> works, again putting chlorophyl in the cache. Upon restarting firefox, the
> error again occurs.
>
> If I turn off java caching, there are no problems. For some reason, Firefox
> does not like chlorophyll in cache.
>
> Phil
>
>
> On Jul 24, 2010, at 7:29 AM, Otis Rothenberger wrote:
>
>> Phil,
>>
>> I'm just curious about something: On a browser that throws the error loading
>> chlorophyll, what happens if you execute the following JavaScript command
>> from the location window (address field) while the first stucture is
>> displayed in Jmol?
>>
>> javascript:jmolScript("load Structures/chlorophyll.pdb")
>>
>> I'm just bypassing the button above to see if the problem is via the button
>> route???
>>
>> Otis
>> Otis Rothenberger
>> chemagic.com
>>
>> On 7/24/2010 6:38 AM, Philip Bays wrote:
>>>
>>> Ok, I got the code right. But it does not work on all browsers. I see
>>> no difference with this code than what I was observing before. Namely, on
>>> the Mac, and the Mac only, and a freshly started mozilla browser (Firefox,
>>> Camino, SeaMonkey), the first structure loads fine, but the chlorophyll
>>> structure throws a java access error with the unsigned applet.
>>>
>>>
>>>
>>> On Jul 23, 2010, at 5:51 PM, Robert Hanson wrote:
>>>
>>>> http://www.saintmarys.edu/~pbays/JStest/HTMLFiles/NT1.html
>>>> http://www.saintmarys.edu/~pbays/JStest/HTMLFiles/NT2.html
>>>>
>>>> Ah, yes, these pages look much better. So what are the results?
>>>>
>>>> The page NT1 should load on all platforms with no issues at all. It is
>>>> precisely the stated way of doing things.
>>>>
>>>> Same for NT2. And from this one I can save the state - see attached. (Just
>>>> drag that PNG file into the app or applet.)
>>>>
>>>> Was that just the issue? That Phil was trying to load models before the
>>>> applet was ready?
>>>>
>>>> One of the nice things about the signed applet on the web is that all the
>>>> file references are http:// references and you have the menu option to
>>>> save the PNG image. This image actually contains the full Jmol state (as a
>>>> trailing comment), so when you save the IMAGE to your hard drive, you can
>>>> still load that image into Jmol and it will work. Really quite magical. I
>>>> just did this with the chlorophyll example, and it still amazes me that it
>>>> is possible.
>>>>
>>>> Bob
>>>>
>>>>
>>>> On Fri, Jul 23, 2010 at 3:38 PM, Otis Rothenberger <[email protected]>
>>>> wrote:
>>>> Phil and Bob,
>>>>
>>>> I'm confused about Bob's last note, but the following point may be
>>>> relevant:
>>>>
>>>> I get the same message as below, but it looks like Phil is on a Unix
>>>> system - case sensitive.
>>>>
>>>> http://www.saintmarys.edu/~pbays/JSTest/HTMLFiles/NT1.html does not exist,
>>>> buts http://www.saintmarys.edu/~pbays/JStest/HTMLFiles/NT1.html does exist.
>>>>
>>>> Otis
>>>> Otis Rothenberger
>>>> chemagic.com
>>>>
>>>> On 7/23/2010 4:03 PM, Robert Hanson wrote:
>>>>>
>>>>>
>>>>>
>>>>> We're sorry...
>>>>>
>>>>> The page you are looking for:
>>>>>
>>>>> /~pbays/JSTest/HTMLFiles/NT1.html
>>>>>
>>>>>
>>>>>
>>>>> On Fri, Jul 23, 2010 at 2:44 PM, Philip Bays <[email protected]> wrote:
>>>>> OK Bob, et. al.:
>>>>>
>>>>> I have tried to mimic a piece of one of your pages, namely:
>>>>>
>>>>> http://chemapps.stolaf.edu/jmol/docs/examples-11/simple.htm
>>>>>
>>>>> I also tried to view this page in Firefox, but you are using the signed
>>>>> applet. Everything I have tried, even the stuff I should never, ever,
>>>>> ever do:-) works with the signed applet for me, and I may ultimately go
>>>>> that route.
>>>>>
>>>>> However, I have the same issues with Firefox on the Mac with the new
>>>>> script. I have loaded it at:
>>>>>
>>>>> www.saintmarys.edu/~pbays/JSTest/HTMLFiles/NT1.html
>>>>>
>>>>> The equivalent path to NT2.html is the signed applet.
>>>>>
>>>>>
>>>>>
>>>>> J. Philip Bays
>>>>> Professor of Chemistry
>>>>> Science Hall 172
>>>>> Saint Mary's College
>>>>> Notre Dame IN 46556
>>>>> (574) 284-4663
>>>>>
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> This SF.net email is sponsored by Sprint
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>>>>> _______________________________________________
>>>>> Jmol-users mailing list
>>>>> [email protected]
>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Robert M. Hanson
>>>>> Professor of Chemistry
>>>>> St. Olaf College
>>>>> 1520 St. Olaf Ave.
>>>>> Northfield, MN 55057
>>>>> http://www.stolaf.edu/people/hansonr
>>>>> phone: 507-786-3107
>>>>>
>>>>>
>>>>> If nature does not answer first what we want,
>>>>> it is better to take what answer we get.
>>>>>
>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> This SF.net email is sponsored by Sprint
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>>>>>
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>>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> This SF.net email is sponsored by Sprint
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>>>>
>>>>
>>>>
>>>> --
>>>> Robert M. Hanson
>>>> Professor of Chemistry
>>>> St. Olaf College
>>>> 1520 St. Olaf Ave.
>>>> Northfield, MN 55057
>>>> http://www.stolaf.edu/people/hansonr
>>>> phone: 507-786-3107
>>>>
>>>>
>>>> If nature does not answer first what we want,
>>>> it is better to take what answer we get.
>>>>
>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>> <chlorophyll.png>------------------------------------------------------------------------------
>>>> This SF.net email is sponsored by Sprint
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>>>> http://p.sf.net/sfu/sprint-com-first_______________________________________________
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>>>
>>> J. Philip Bays
>>> Professor of Chemistry
>>> Department of Chemistry and Physics
>>> Saint Mary's College
>>> Notre Dame, IN 46556
>>> (574) 284-4663
>>> [email protected]
>>>
>>>
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> This SF.net email is sponsored by Sprint
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>>> _______________________________________________
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>> ------------------------------------------------------------------------------
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>
> J. Philip Bays
> Professor of Chemistry
> Department of Chemistry and Physics
> Saint Mary's College
> Notre Dame, IN 46556
> (574) 284-4663
> [email protected]
>
>
>
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by Sprint
> What will you do first with EVO, the first 4G phone?
> Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by Sprint
> What will you do first with EVO, the first 4G phone?
> Visit sprint.com/first --
> http://p.sf.net/sfu/sprint-com-first_______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
J. Philip Bays
Professor of Chemistry
Science Hall 172
Saint Mary's College
Notre Dame IN 46556
(574) 284-4663
------------------------------------------------------------------------------
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