Try Présentation: http://iihm.imag.fr/blanch/software/osx-presentation/
I used it when I presented my thesis.
If you do double display (e.g. connect your computer to a projector) then you
can see on the laptop monitor your notes for the presentation together with a
timer and a thumbnail of the next slide.
However I don't know how you add in LaTeX those notes to the pdf, and I never
dig deep into what it means in terms of adobe's pdf specs.
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