jbibtexmanager and lyx on cygwin

[vsharma]

Hi
Has anyone used jbibtexmanager to push citations into lyx running in cygwin?
I use the cygwin port and have found jbibtexmanager a very good tool to 
generate bibtex from pubmed citations downloaded as xml, unfortunately I 
have not been able to search select and push citations into lyx.
I am defining in the I have the following configuration Home is c:\data\lyx
Preferences in c:\data\lyx\.lyx has the following line
\serverpipe "/cygdrive/c/data/lyx/.lyx/lyxpipe"
In jbibtexmanager I have the lyxpipe defined as
c:\data\lyx\.lyx\lyxpipe
I wonder if this is an issue with running jbibtex in windows as a java 
application and lyx on cygwin?
any help appreciated
vivek