Sorry for late reply, I've destroyed my boost converter somehow and had to 
rebuild it from scratch. I've tried the current limiter, but without 
success - I don't know why, I followed the article and I think that this 
just won't work for such voltage drops or something. Funny thing is that 
I've chosen a small R1 for one try and with intention to blow things up 
I've connected it directly to converter, without any load. Of course, R1 
blew up, but funny thing is that after burning the circuit was passing 
1,2mA - and I was aiming at 1mA :D
Of course this was just a resistor burning from 1,2k to around 250k, not a 
working limiter.

I have another idea. What do you think about using optoisolator in active 
range? It would require testing each batch of components, as they tend to 
have varying current transfer ratio, but you'd be able to control the 
current on low voltage side (even from DAC).
I'm looking for a stable method of controlling it without any resistors 
going from HV to ground, as it would waste alot of power, at least with 
bipolar transistors - with a p-mosfet it could work with resistances in 
voltage divider like 4,7MOhm, but mosfets tend to change their 
characteristics with temperature.

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