looks like building numpy requires fortran, install a fortran compiler..
On Sat, Nov 16, 2013 at 10:49 AM, Nicholas Mitri <[email protected]>wrote: > I ended up downloading the latest zip of the master. Tried to install the > dependencies but it always gets stuck at this point. > As a point of reference, here are the versions of all the tools: > > python : 2.6.8 > make: 3.81 > clang: apple LLVM 4.2 (based on LLVM 3.2svn) > pip: 1.4.1 > > Any ideas? > Nicholas > > Downloading/unpacking numpy==1.7.1 (from -r > /Users/Hajj/Software/nupic-master/external/common/requirements.txt (line > 17)) > Downloading numpy-1.7.1.tar.gz (2.8MB): 2.8MB downloaded > Running setup.py egg_info for package numpy > Running from numpy source directory. > non-existing path in 'numpy/distutils': 'site.cfg' > F2PY Version 2 > blas_opt_info: > FOUND: > extra_link_args = ['-Wl,-framework', '-Wl,Accelerate'] > define_macros = [('NO_ATLAS_INFO', 3)] > extra_compile_args = ['-msse3', > '-I/System/Library/Frameworks/vecLib.framework/Headers'] > > > lapack_opt_info: > FOUND: > extra_link_args = ['-Wl,-framework', '-Wl,Accelerate'] > define_macros = [('NO_ATLAS_INFO', 3)] > extra_compile_args = ['-msse3'] > > > build_src > building py_modules sources > building library "npymath" sources > customize Gnu95FCompiler > Could not locate executable gfortran > Could not locate executable f95 > customize NAGFCompiler > customize AbsoftFCompiler > Could not locate executable f90 > Could not locate executable f77 > customize IBMFCompiler > Could not locate executable xlf90 > Could not locate executable xlf > customize IntelFCompiler > Could not locate executable ifort > Could not locate executable ifc > customize GnuFCompiler > Could not locate executable g77 > customize G95FCompiler > Could not locate executable g95 > customize PGroupFCompiler > Could not locate executable pgfortran > don't know how to compile Fortran code on platform 'posix' > C compiler: cc -fno-strict-aliasing -fno-common -dynamic -g -Os -pipe > -fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE > -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g > -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch > i386 -pipe > > > compile options: '-Inumpy/core/src/private -Inumpy/core/src > -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray > -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include > -I/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 > -c' > cc: _configtest.c > clang: warning: argument unused during compilation: '-mno-fused-madd' > > On Nov 15, 2013, at 7:30 PM, Austin Marshall <[email protected]> wrote: > > It's also important to note that the `--boxed`-related error is likely due > to pytest-xdist (https://pypi.python.org/pypi/pytest-xdist, included in > requirements.txt at > https://github.com/numenta/nupic/blob/master/external/common/requirements.txt#L10) > not being installed. > > > On Fri, Nov 15, 2013 at 9:22 AM, Nicholas Mitri <[email protected]>wrote: > >> Thanks for the reply! >> >> The error logs are based on pytest 2.4.2. which I downloaded instead. >> Forgot to mention that. >> I will try the other versions though and get back. >> >> Nicholas >> >> >> On Nov 15, 2013, at 5:31 PM, Marek Otahal <[email protected]> wrote: >> >> Downloading/unpacking pytest==2.4.0.dev8 (from -r >> external/common/requirements. >> txt (line 9)) >> Could not find a version that satisfies the requirement >> pytest==2.4.0.dev8 (from -r external/common/requirements.txt (line 9)) >> (from versions: 2.0.0, 2.0.1, 2.0.2, 2.0.3, 2.1.0, 2.1.1, 2.1.2, 2.1.3, >> 2.2.0, 2.2.1, 2.2.2, 2.2.3, 2.2.4, 2.3.0, 2.3.1, 2.3.2, 2.3.3, 2.3.4, >> 2.3.5, 2.4.0, 2.4.1, 2.4.2) >> Cleaning up... >> No distributions matching the version for pytest==2.4.0.dev8 (from -r >> external/common/requirements.txt (line 9)) >> Storing complete log in /Users/Hajj/Library/Logs/pip.log >> >> >> change the line in requirements.txt to either 2.4.0 or 2.4.1 version, >> >> >> On Fri, Nov 15, 2013 at 4:28 PM, Nicholas Mitri <[email protected]>wrote: >> >>> Hey all, >>> >>> I’ve been trying to get everything built for the last few days but keep >>> getting stuck on the dependencies. >>> Build.sh is going fine. The c++ tests are all working. The py tests on >>> the other hand are failing. >>> I’m attaching the output of the pytest, the gym example, and the pip >>> requirement installation in order. >>> Sorry for the lengthy post. I’d appreciate any help to get this up and >>> running. >>> >>> regards, >>> Nicholas >>> >>> >>> ———LOGS——— >>> >>> usage: run_tests.py [options] [file_or_dir] [file_or_dir] [...] >>> run_tests.py: error: unrecognized arguments: --boxed >>> >>> —————— >>> >>> Traceback (most recent call last): >>> File >>> "/Users/Hajj/Software/NUPIC/examples/opf/bin/OpfRunExperiment.py", line 29, >>> in <module> >>> from nupic.frameworks.opf.experiment_runner import (runExperiment, >>> File >>> "/Users/Hajj/nta/eng/lib/python2.6/site-packages/nupic/frameworks/opf/experiment_runner.py", >>> line 37, in <module> >>> from nupic.data import jsonhelpers >>> File >>> "/Users/Hajj/nta/eng/lib/python2.6/site-packages/nupic/data/jsonhelpers.py", >>> line 42, in <module> >>> import validictory >>> ImportError: No module named validictory >>> >>> —————— >>> >>> Downloading/unpacking asteval==0.9.1 (from -r >>> external/common/requirements.txt (line 3)) >>> Downloading asteval-0.9.1.tar.gz >>> Running setup.py egg_info for package asteval >>> warning: no files found matching 'README.txt' >>> warning: no previously-included files found matching '*.pyc' >>> warning: no previously-included files found matching 'core.*' >>> warning: no previously-included files found matching '*~' >>> warning: no previously-included files found matching '*.pdf' >>> warning: no previously-included files matching '*' found under >>> directory 'doc/_build' >>> warning: no previously-included files matching '*.pdf' found under >>> directory 'doc' >>> Downloading/unpacking mock==1.0.1 (from -r >>> external/common/requirements.txt (line 4)) >>> Running setup.py egg_info for package mock >>> warning: no files found matching '*.png' under directory 'docs' >>> warning: no files found matching '*.css' under directory 'docs' >>> warning: no files found matching '*.html' under directory 'docs' >>> warning: no files found matching '*.js' under directory 'docs' >>> Downloading/unpacking ordereddict==1.1 (from -r >>> external/common/requirements.txt (line 5)) >>> Downloading ordereddict-1.1.tar.gz >>> Running setup.py egg_info for package ordereddict >>> Downloading/unpacking PIL==1.1.7 (from -r >>> external/common/requirements.txt (line 6)) >>> You are installing a potentially insecure and unverifiable file. >>> Future versions of pip will default to disallowing insecure files. >>> Running setup.py egg_info for package PIL >>> WARNING: '' not a valid package name; please use only.-separated >>> package names in setup.py >>> Downloading/unpacking psutil==1.0.1 (from -r >>> external/common/requirements.txt (line 7)) >>> You are installing an externally hosted file. Future versions of pip >>> will default to disallowing externally hosted files. >>> You are installing a potentially insecure and unverifiable file. >>> Future versions of pip will default to disallowing insecure files. >>> Running setup.py egg_info for package psutil >>> Downloading/unpacking pylint==0.28.0 (from -r >>> external/common/requirements.txt (line 8)) >>> Running setup.py egg_info for package pylint >>> Downloading/unpacking pytest==2.4.0.dev8 (from -r >>> external/common/requirements.txt (line 9)) >>> Could not find a version that satisfies the requirement >>> pytest==2.4.0.dev8 (from -r external/common/requirements.txt (line 9)) >>> (from versions: 2.0.0, 2.0.1, 2.0.2, 2.0.3, 2.1.0, 2.1.1, 2.1.2, 2.1.3, >>> 2.2.0, 2.2.1, 2.2.2, 2.2.3, 2.2.4, 2.3.0, 2.3.1, 2.3.2, 2.3.3, 2.3.4, >>> 2.3.5, 2.4.0, 2.4.1, 2.4.2) >>> Cleaning up... >>> No distributions matching the version for pytest==2.4.0.dev8 (from -r >>> external/common/requirements.txt (line 9)) >>> Storing complete log in /Users/Hajj/Library/Logs/pip.log >>> >>> ———END LOGS——— >>> _______________________________________________ >>> nupic mailing list >>> [email protected] >>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org >>> >> >> >> >> -- >> Marek Otahal :o) >> _______________________________________________ >> nupic mailing list >> [email protected] >> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org >> >> >> >> _______________________________________________ >> nupic mailing list >> [email protected] >> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org >> >> > _______________________________________________ > nupic mailing list > [email protected] > http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org > > > > _______________________________________________ > nupic mailing list > [email protected] > http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org > > -- Marek Otahal :o)
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