Updated:
gfortran: 4.8.2
I’m curious if any one has reported this difficulty with the installation.
The installation guide is pretty straightforward at first glance.
Also, if there is any non-developer support thread to redirect these inquiries,
please point me in that direction.
Nicholas
Downloading/unpacking numpy==1.7.1 (from -r
/Users/Hajj/Software/nupic-master/external/common/requirements.txt (line 17))
Downloading numpy-1.7.1.tar.gz (2.8MB): 2.8MB downloaded
Running setup.py egg_info for package numpy
Running from numpy source directory.
non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2
blas_opt_info:
FOUND:
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
define_macros = [('NO_ATLAS_INFO', 3)]
extra_compile_args = ['-msse3',
'-I/System/Library/Frameworks/vecLib.framework/Headers']
lapack_opt_info:
FOUND:
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
define_macros = [('NO_ATLAS_INFO', 3)]
extra_compile_args = ['-msse3']
build_src
building py_modules sources
building library "npymath" sources
customize Gnu95FCompiler
Found executable /usr/local/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
C compiler: cc -fno-strict-aliasing -fno-common -dynamic -g -Os -pipe
-fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE
-DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g
-fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386
-pipe
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core
-Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath
-Inumpy/core/src/npysort -Inumpy/core/include
-I/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c'
cc: _configtest.c
clang: warning: argument unused during compilation: '-mno-fused-madd’
On Nov 16, 2013, at 12:23 PM, Marek Otahal <[email protected]> wrote:
> looks like building numpy requires fortran, install a fortran compiler..
>
>
> On Sat, Nov 16, 2013 at 10:49 AM, Nicholas Mitri <[email protected]> wrote:
> I ended up downloading the latest zip of the master. Tried to install the
> dependencies but it always gets stuck at this point.
> As a point of reference, here are the versions of all the tools:
>
> python : 2.6.8
> make: 3.81
> clang: apple LLVM 4.2 (based on LLVM 3.2svn)
> pip: 1.4.1
>
> Any ideas?
> Nicholas
>
> Downloading/unpacking numpy==1.7.1 (from -r
> /Users/Hajj/Software/nupic-master/external/common/requirements.txt (line 17))
> Downloading numpy-1.7.1.tar.gz (2.8MB): 2.8MB downloaded
> Running setup.py egg_info for package numpy
> Running from numpy source directory.
> non-existing path in 'numpy/distutils': 'site.cfg'
> F2PY Version 2
> blas_opt_info:
> FOUND:
> extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
> define_macros = [('NO_ATLAS_INFO', 3)]
> extra_compile_args = ['-msse3',
> '-I/System/Library/Frameworks/vecLib.framework/Headers']
>
> lapack_opt_info:
> FOUND:
> extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
> define_macros = [('NO_ATLAS_INFO', 3)]
> extra_compile_args = ['-msse3']
>
> build_src
> building py_modules sources
> building library "npymath" sources
> customize Gnu95FCompiler
> Could not locate executable gfortran
> Could not locate executable f95
> customize NAGFCompiler
> customize AbsoftFCompiler
> Could not locate executable f90
> Could not locate executable f77
> customize IBMFCompiler
> Could not locate executable xlf90
> Could not locate executable xlf
> customize IntelFCompiler
> Could not locate executable ifort
> Could not locate executable ifc
> customize GnuFCompiler
> Could not locate executable g77
> customize G95FCompiler
> Could not locate executable g95
> customize PGroupFCompiler
> Could not locate executable pgfortran
> don't know how to compile Fortran code on platform 'posix'
> C compiler: cc -fno-strict-aliasing -fno-common -dynamic -g -Os -pipe
> -fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE
> -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g
> -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386
> -pipe
>
> compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core
> -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath
> -Inumpy/core/src/npysort -Inumpy/core/include
> -I/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6
> -c'
> cc: _configtest.c
> clang: warning: argument unused during compilation: '-mno-fused-madd'
>
> On Nov 15, 2013, at 7:30 PM, Austin Marshall <[email protected]> wrote:
>
>> It's also important to note that the `--boxed`-related error is likely due
>> to pytest-xdist (https://pypi.python.org/pypi/pytest-xdist, included in
>> requirements.txt at
>> https://github.com/numenta/nupic/blob/master/external/common/requirements.txt#L10)
>> not being installed.
>>
>>
>> On Fri, Nov 15, 2013 at 9:22 AM, Nicholas Mitri <[email protected]> wrote:
>> Thanks for the reply!
>>
>> The error logs are based on pytest 2.4.2. which I downloaded instead. Forgot
>> to mention that.
>> I will try the other versions though and get back.
>>
>> Nicholas
>>
>>
>> On Nov 15, 2013, at 5:31 PM, Marek Otahal <[email protected]> wrote:
>>
>>> Downloading/unpacking pytest==2.4.0.dev8 (from -r
>>> external/common/requirements.
>>> txt (line 9))
>>> Could not find a version that satisfies the requirement
>>> pytest==2.4.0.dev8 (from -r external/common/requirements.txt (line 9))
>>> (from versions: 2.0.0, 2.0.1, 2.0.2, 2.0.3, 2.1.0, 2.1.1, 2.1.2, 2.1.3,
>>> 2.2.0, 2.2.1, 2.2.2, 2.2.3, 2.2.4, 2.3.0, 2.3.1, 2.3.2, 2.3.3, 2.3.4,
>>> 2.3.5, 2.4.0, 2.4.1, 2.4.2)
>>> Cleaning up...
>>> No distributions matching the version for pytest==2.4.0.dev8 (from -r
>>> external/common/requirements.txt (line 9))
>>> Storing complete log in /Users/Hajj/Library/Logs/pip.log
>>>
>>>
>>> change the line in requirements.txt to either 2.4.0 or 2.4.1 version,
>>>
>>>
>>> On Fri, Nov 15, 2013 at 4:28 PM, Nicholas Mitri <[email protected]> wrote:
>>> Hey all,
>>>
>>> I’ve been trying to get everything built for the last few days but keep
>>> getting stuck on the dependencies.
>>> Build.sh is going fine. The c++ tests are all working. The py tests on the
>>> other hand are failing.
>>> I’m attaching the output of the pytest, the gym example, and the pip
>>> requirement installation in order.
>>> Sorry for the lengthy post. I’d appreciate any help to get this up and
>>> running.
>>>
>>> regards,
>>> Nicholas
>>>
>>>
>>> ———LOGS———
>>>
>>> usage: run_tests.py [options] [file_or_dir] [file_or_dir] [...]
>>> run_tests.py: error: unrecognized arguments: --boxed
>>>
>>> ——————
>>>
>>> Traceback (most recent call last):
>>> File "/Users/Hajj/Software/NUPIC/examples/opf/bin/OpfRunExperiment.py",
>>> line 29, in <module>
>>> from nupic.frameworks.opf.experiment_runner import (runExperiment,
>>> File
>>> "/Users/Hajj/nta/eng/lib/python2.6/site-packages/nupic/frameworks/opf/experiment_runner.py",
>>> line 37, in <module>
>>> from nupic.data import jsonhelpers
>>> File
>>> "/Users/Hajj/nta/eng/lib/python2.6/site-packages/nupic/data/jsonhelpers.py",
>>> line 42, in <module>
>>> import validictory
>>> ImportError: No module named validictory
>>>
>>> ——————
>>>
>>> Downloading/unpacking asteval==0.9.1 (from -r
>>> external/common/requirements.txt (line 3))
>>> Downloading asteval-0.9.1.tar.gz
>>> Running setup.py egg_info for package asteval
>>> warning: no files found matching 'README.txt'
>>> warning: no previously-included files found matching '*.pyc'
>>> warning: no previously-included files found matching 'core.*'
>>> warning: no previously-included files found matching '*~'
>>> warning: no previously-included files found matching '*.pdf'
>>> warning: no previously-included files matching '*' found under
>>> directory 'doc/_build'
>>> warning: no previously-included files matching '*.pdf' found under
>>> directory 'doc'
>>> Downloading/unpacking mock==1.0.1 (from -r external/common/requirements.txt
>>> (line 4))
>>> Running setup.py egg_info for package mock
>>> warning: no files found matching '*.png' under directory 'docs'
>>> warning: no files found matching '*.css' under directory 'docs'
>>> warning: no files found matching '*.html' under directory 'docs'
>>> warning: no files found matching '*.js' under directory 'docs'
>>> Downloading/unpacking ordereddict==1.1 (from -r
>>> external/common/requirements.txt (line 5))
>>> Downloading ordereddict-1.1.tar.gz
>>> Running setup.py egg_info for package ordereddict
>>> Downloading/unpacking PIL==1.1.7 (from -r external/common/requirements.txt
>>> (line 6))
>>> You are installing a potentially insecure and unverifiable file. Future
>>> versions of pip will default to disallowing insecure files.
>>> Running setup.py egg_info for package PIL
>>> WARNING: '' not a valid package name; please use only.-separated
>>> package names in setup.py
>>> Downloading/unpacking psutil==1.0.1 (from -r
>>> external/common/requirements.txt (line 7))
>>> You are installing an externally hosted file. Future versions of pip will
>>> default to disallowing externally hosted files.
>>> You are installing a potentially insecure and unverifiable file. Future
>>> versions of pip will default to disallowing insecure files.
>>> Running setup.py egg_info for package psutil
>>> Downloading/unpacking pylint==0.28.0 (from -r
>>> external/common/requirements.txt (line 8))
>>> Running setup.py egg_info for package pylint
>>> Downloading/unpacking pytest==2.4.0.dev8 (from -r
>>> external/common/requirements.txt (line 9))
>>> Could not find a version that satisfies the requirement
>>> pytest==2.4.0.dev8 (from -r external/common/requirements.txt (line 9))
>>> (from versions: 2.0.0, 2.0.1, 2.0.2, 2.0.3, 2.1.0, 2.1.1, 2.1.2, 2.1.3,
>>> 2.2.0, 2.2.1, 2.2.2, 2.2.3, 2.2.4, 2.3.0, 2.3.1, 2.3.2, 2.3.3, 2.3.4,
>>> 2.3.5, 2.4.0, 2.4.1, 2.4.2)
>>> Cleaning up...
>>> No distributions matching the version for pytest==2.4.0.dev8 (from -r
>>> external/common/requirements.txt (line 9))
>>> Storing complete log in /Users/Hajj/Library/Logs/pip.log
>>>
>>> ———END LOGS———
>>> _______________________________________________
>>> nupic mailing list
>>> [email protected]
>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>>>
>>>
>>>
>>> --
>>> Marek Otahal :o)
>>> _______________________________________________
>>> nupic mailing list
>>> [email protected]
>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>>
>>
>> _______________________________________________
>> nupic mailing list
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>>
>>
>> _______________________________________________
>> nupic mailing list
>> [email protected]
>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>
>
> _______________________________________________
> nupic mailing list
> [email protected]
> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>
>
>
>
> --
> Marek Otahal :o)
> _______________________________________________
> nupic mailing list
> [email protected]
> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
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